Shewanella khirikhana: STH12_00048
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Entry
STH12_00048 CDS
T06711
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_00048 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_00048 (groL)
03110 Chaperones and folding catalysts [BR:
skh03110
]
STH12_00048 (groL)
03029 Mitochondrial biogenesis [BR:
skh03029
]
STH12_00048 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
skh04147
]
STH12_00048 (groL)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
STH12_00048 (groL)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
STH12_00048 (groL)
Chaperones and folding catalysts [BR:
skh03110
]
Heat shock proteins
HSP60 / Chaperonin
STH12_00048 (groL)
Mitochondrial biogenesis [BR:
skh03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
STH12_00048 (groL)
Exosome [BR:
skh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
STH12_00048 (groL)
Exosomal proteins of other body fluids (saliva and urine)
STH12_00048 (groL)
Exosomal proteins of breast cancer cells
STH12_00048 (groL)
Exosomal proteins of colorectal cancer cells
STH12_00048 (groL)
Exosomal proteins of bladder cancer cells
STH12_00048 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF5891
Phage_GP20
Motif
Other DBs
NCBI-ProteinID:
AZQ09201
LinkDB
All DBs
Position
54074..55711
Genome browser
AA seq
545 aa
AA seq
DB search
MAAKEVVFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLEKSFGAPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGI
DKAVAAAVIELKNLSQECADSKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELDNPFVLLVDKKISNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
IAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGAEEQIKARVTQIKQQIEETSSDY
DREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALV
RVASKISDVEVANEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGAGNFGYNA
GNDSYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVAELPKADAPDMGGMGGMGG
MGGMM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagtagtatttggtaacgacgcccgcgtaaaaatgctggctggtgta
aacgtgctggccaacgccgttaaagtaactctgggccctaaaggccgcaacgtagtgctg
gaaaagagcttcggcgcgccgctgatcaccaaagacggtgtatctgtagccaaagaaatc
gaactggaagacaagttcgagaacatgggcgcccagatggtgaaggaagtggcttccaag
gccaacgacgctgccggtgacggcaccaccaccgccactgtactggctcaggccattgtg
aacgaaggtctgaaggccgttgccgctggcatgaacccaatggatctgaagcgcggtatc
gacaaagccgttgccgccgccgtaatcgaactgaaaaacctgtcccaggaatgtgccgac
tccaaggccatcgctcaggtaggtaccatctctgccaactctgacgagtccatcggtgaa
atcattgccaccgccatggaaaaagtaggcaaagaaggcgttatcactgttgaagaaggt
caggcgctggaaaacgaactggacgtagtagaaggtatgcagttcgaccgcggctacctg
tctccttacttcatcaacaagccagaaaccggctcagttgaactggacaacccattcgtg
ctgctggttgacaagaagatctccaacatccgcgaactgctgcctatcctcgaaggtctg
gccaagaccggcaagcctctgctgatcgttgccgaagacgtggaaggcgaagccctggcg
actctggtagtgaacaacatgcgcggtatcgtgaaggttgctgccgttaaagccccaggc
tttggtgaccgtcgcaaggccatgctgcaggatatcgccatcctcaccggtggtactgta
atcgccgaagaaatcggtctggagctggaaaaagccactctggaagatctgggcactgcc
aagcgcgttgtgatcaccaaggacaacaccaccatcatcgatggcaacggtgccgaggag
cagatcaaggctcgcgtaacccaaatcaaacagcaaatcgaagaaacctcttccgattac
gaccgtgaaaaactgcaagagcgtatggccaagctggccggcggtgttgccgttatcaag
gttggcgctgccaccgaagtggaaatgaaagagaagaaagcccgcgttgaagacgccctg
cacgccacccgcgccgccgttgaagaaggtgtggttcctggcggcggtgtagccctagtt
cgcgttgcttccaagattagcgacgttgaagtagccaacgaagatcagaagcacggtgtg
gttatcgccctgcgcgccatggaagccccactgcgccaaatcgccaccaacgccggtgaa
gaagcctctgtagtggccaacaccgtgaagaacggtgctggtaacttcggttacaacgct
ggtaacgacagctacggcgacatgctggaaatgggtatcctggacccaaccaaggtaacc
cgctcagcactgcagtttgcagcctctgtagccggtctgatgatcaccaccgaagccatg
gtagccgagctgccaaaggccgatgcccctgatatgggtggtatgggtggtatgggcggt
atgggcggcatgatgtaa
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