Shewanella khirikhana: STH12_00299
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Entry
STH12_00299 CDS
T06711
Symbol
pcnB
Name
(GenBank) Poly(A) polymerase I precursor
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_00299 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_00299 (pcnB)
Enzymes [BR:
skh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
STH12_00299 (pcnB)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STH12_00299 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AZQ09451
LinkDB
All DBs
Position
complement(361232..362509)
Genome browser
AA seq
425 aa
AA seq
DB search
MLYRLHKAGYEAFLVGGGVRDLLLGMEPKDFDVVTNATPEDIKKLFRNCRLVGRRFRLAH
IVFGRDVIEVATFRGHHSDEAGDKISKANAQGRLLRDNVYGSIDEDAERRDFTVNALYYD
ISDYSIRSYGGGMEDLNDGVLRLIGDPETRYREDPVRMIRAVRFATKLGMRIEEVTAAPI
RKLAPLLKDIPAARMYEEVLKLFFAGKAQANLQMMQEYNLFAPLFPLLDDMMREAPKGDC
ARMATLVMRSTDLRVMEDKPVTPAFFYAALLWYPLKRRAEEIAHESGLSLYDAYFAAMGD
VLEQQCQSIAIPKRFSVPARDIWQLQLRFERSQGTRAFKLMENPKFRAAYDLLLMRAEIE
GGSLKKSAQWWQNFVEASEDERGDIARSGAKSDAPRNRKRRVRRRPRSEGGKGEGSKAQH
SGSEA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
gtgctctatcgcctgcacaaagccggctacgaggcctttttggttggcggcggtgtccgc
gacctgctgctgggcatggaacccaaagacttcgacgtggtaaccaacgccaccccggaa
gacatcaaaaaattgttccgcaactgccgtctggtcggtcgtcgtttccgtttggcccat
attgtattcggccgtgacgtgattgaagttgccaccttccgtggccaccattccgacgaa
gcaggcgacaagatttccaaggccaacgcccagggccgtctgctgcgtgacaatgtctac
ggcagcatcgatgaagatgccgagcgccgcgacttcacagttaacgccctttactacgac
atcagcgattactctatccgcagctatggcggcggcatggaagatctcaacgatggcgtg
ctgcgtctgattggcgatcctgaaacccgctaccgcgaagatccggtgcggatgatccgc
gccgtgcgctttgccaccaagctggggatgcggattgaagaagtgaccgctgcgcctatc
cgcaagctggccccgctgctcaaagacattcccgctgcgcgcatgtacgaagaagtgctc
aagctgttcttcgccggtaaggcccaggcgaacctgcaaatgatgcaggaatacaacctg
tttgcgccgctgttcccgctgctggacgacatgatgcgcgaagcgcccaagggtgactgc
gcccgtatggcaacgctggtcatgcgcagcaccgaccttagggtaatggaagacaagccg
gtgactccggccttcttctacgctgcgctgctgtggtatccacttaagcgccgcgccgaa
gaaattgctcacgagagcggtctgagcctgtacgacgcctacttcgccgccatgggcgat
gtgctcgaacaacagtgccagtccattgcgatccctaagcgtttcagtgtgcctgcccgt
gatatctggcagctgcagctgagatttgagcgcagccagggcacccgtgcctttaagctg
atggaaaatccgaagttccgcgccgcctacgatctcttgctgatgcgcgccgaaattgaa
ggcggcagcctgaagaaatccgcccagtggtggcagaactttgtggaagcctccgaagat
gagcgcggcgacatcgcccgcagcggcgccaagtctgatgcaccacgtaaccgcaagcgc
cgggtgcgccgtcgtccccgcagcgaaggcggcaagggcgaaggttcaaaagcccagcac
agcggcagcgaagcatga
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