Shewanella khirikhana: STH12_00458
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Entry
STH12_00458 CDS
T06711
Name
(GenBank) hypothetical protein
KO
K02674
type IV pilus assembly protein PilY1
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
skh02044
]
STH12_00458
02035 Bacterial motility proteins [BR:
skh02035
]
STH12_00458
Secretion system [BR:
skh02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
STH12_00458
Bacterial motility proteins [BR:
skh02035
]
Pilus system
Pilus assembly proteins
STH12_00458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4P_PilY1
Motif
Other DBs
NCBI-ProteinID:
AZQ09609
LinkDB
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Position
529469..533014
Genome browser
AA seq
1181 aa
AA seq
DB search
MFRKTIVGVAAALTVMSGVSFGDDTELYLIESNVRVGKRPQVLFVFDNSGSMSTEDQNSS
SSYCSPAEATAGTCTLDPNFVEFAESYSGYINDNAIYWNSGGIDGSSTMPTPENPTDSRR
FFHENNNCNGAKKALASRGRYTGYMWERNKTGNTYAWEDLKENEGLNKNDIFDCWQDWNE
SDPSNPGSTYSTDGYPQNGAKDGYVSDRPATSPPLGRPVTLYTPHYLVWYKWATTTTDGQ
NSGGTGTRLEVAKEAMQDALENLSIPIDAGLAIFNLNYPEDGNADGGRIVYPIQEMTSSN
VNSLVTLINSTPAQTNTPLCETLYEAYQYFSGGPVTYGNKDANGKGWYKIDGYQVNTPPS
ILSEGNYTTPFKKCPDVGYVIYITDGAPTLDNHADTSISTLIGNAKVKADYSTVSYYDSY
LDEEKESYFPALAAYMFNNDLVSGPVDSKGNDNKQSVRLFTIGFSAGADAAAELLEEAAF
RGGNPRNDSGVSKGYYRAATGLDLAAALEDALKTILAVDSSFTSPSIASNNFDKTQTYNS
AYYAMFLPGSGPRWSGNLKKLKVTASGELVAPGPTANAIDEAGNISSTTCTYWNSCASSA
PDGNRVNSGGVLPKLRAKLKSRKILTNVGGLTDIDNVAESTMYSLLGSPAAESEAVAVQT
HLDWLYGVDVDNDDNDFDADGKPIVTDAREDIMGDPLHSKPLAINFGESTSSLDVRVLVG
TNQGLLHMFKDSDTGSNDYSVGTVDESWAFIPAELIDNLPALRQNEATGTHNVYGLDSSP
VAYTKTDASGKVIEAWVYIGMRRGGSSYYALNITSPDSPVLGWVINPSSDGFTNLGQTWS
EPVVTTVPGVDGPVLIFGGGYGDSSAGKGKGVYIVEALTGKKIHHFVHDDMDAIPNKVAV
LDSNNDGATDRIYATDISGNVWRMDLANKVPGDWTTFKFASIGSTSPNNRMFFAEPTVAQ
TQFTNLHSESGVLSYQTIPYDAVTVGSGNRTHPLDATTVDMFYVFQDRNVVSKHFSDTDT
PAALTIADLYDVSSNPPSSEADNVTFGTKRGWYYDFNMAGEKTLSASLIFDGKVYFTSFI
PPTDQTVDLDAGICGFSGQGRLYVFDLHKGTRTYSQVYYELGERVPDTPQIVIPEPKEGE
EPQAYIIGVGKGEQDENGQYKGTINIGTGLDTNKIYFHVDE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggaaaaccatcgttggtgtggccgctgcgctcaccgttatgtctggtgttagc
tttggtgatgacactgagctgtatcttattgaatccaacgttagggtagggaaaaggcca
caggtactgttcgtcttcgataactcaggcagtatgtccacggaagaccaaaactcaagc
agctcctattgttccccggctgaagcgactgctggcacctgtactttggacccaaatttc
gtcgaatttgcggaaagttactccggttatattaacgacaatgccatatattggaattct
ggcgggatagacggcagtagtaccatgccgacacccgaaaacccaacggatagtcgccgt
ttttttcatgaaaacaacaattgtaatggcgcaaaaaaagccttggcgagccgtggtcga
tataccggttatatgtgggaacgcaacaaaaccggaaatacctatgcttgggaagacctg
aaggaaaatgagggtctcaataaaaatgatatttttgattgttggcaagattggaatgaa
tcagacccttctaaccccggcagcacctattctacagatggctatccacaaaatggtgct
aaagatggttatgtctccgatagaccagcgacctcccctccattaggccgcccagttacc
ctttatactcctcactatctagtttggtacaaatgggccactacaactaccgatggacag
aatagcggtggtactggaacgcgtttggaggttgccaaggaagcaatgcaggatgccttg
gaaaacctgagtattccgattgatgctggtttggcgattttcaatttaaactatccagaa
gatggcaatgcggatggcggccggattgtttatccaattcaggaaatgacatcaagcaac
gtgaactctctggtaactttgattaatagtacgccagcacaaactaatacaccactctgt
gaaaccttatacgaagcatatcagtattttagtggtgggcctgttacttatggaaataag
gatgccaacggaaagggctggtacaaaattgacggatatcaggttaatacgccgccaagt
attttgagtgaaggtaactacacaacgcccttcaagaaatgtcccgatgttggttatgta
atctatattacagatggtgccccaacactggacaatcacgcagatactagcattagtact
ttaataggaaatgccaaggtcaaggctgactatagtacagtgagttattacgattcttat
cttgacgaggaaaaggaaagttatttccctgcgctcgcagcatatatgtttaacaatgat
ttggtatctgggcccgtagactccaagggtaacgataacaagcaatccgtcaggttattt
acaatcggcttttctgcaggcgccgatgccgcggcagagttgttggaggaggccgccttc
aggggggggaatcctcgaaatgatagtggagtatcaaaaggctattatcgggctgcaacg
ggtctggatttggctgcagcgttggaagatgcgctgaagacgattttggcggtcgattct
tcgttcacatcgcccagtattgccagtaataactttgacaaaacccaaacttataactca
gcctattatgcgatgtttcttcctggcagtggccccagatggagtgggaatcttaagaaa
ctcaaagtaacggcatctggtgaattggtcgcgcctggtccaacagctaatgctattgat
gaggctggcaacatttcctcgacaacctgcacttattggaactcatgtgcttcgagtgct
cccgatgggaatagggtcaattctggtggggtactgcctaagctgagggcaaagctaaaa
tccaggaagattcttaccaacgttggcggtttgaccgatattgacaatgttgctgagtca
acgatgtacagtttgctcggtagtccagcggcagaatctgaagctgtagctgttcagact
catctggattggctgtatggcgtcgatgttgacaacgacgacaatgattttgatgctgat
ggaaaaccaattgttacggatgcccgtgaagatattatgggagaccctctgcactccaaa
ccgttggctattaactttggcgaatccacctcaagtttggatgtgcgagtcttggtaggc
actaaccaaggtttgctgcacatgttcaaagactctgatacaggcagcaatgattacagc
gttggtactgttgatgagtcctgggcttttattccggcagagctaatcgataacttacct
gctctgagacaaaacgaagcaactggaacgcataatgtgtatggcttggactcatcaccc
gttgcttacaccaaaacagatgcgtcgggtaaggtgattgaagcctgggtatacataggt
atgcgcagaggtggttcatcttattacgcattgaatattacttcacccgactcgccagtg
cttggctgggtgatcaacccgagctcggatggattcaccaatttaggccagacatggtct
gagccagtcgtcactacggttcccggtgtggatggccctgtgctgatatttggtggaggc
tatggtgattccagcgctggtaaaggtaagggtgtttatattgtagaagccttaaccggt
aaaaaaatacatcattttgttcatgatgatatggacgccattccgaacaaagttgctgtt
cttgacagtaataacgatggtgccaccgacagaatctatgctaccgatataagtggcaat
gtatggcgtatggacttggcaaacaaggttcctggagattggacgacctttaagtttgcc
tctatcggcagtacttcgcccaacaatcggatgttttttgctgagccgacagttgctcag
actcagttcaccaatcttcattcggaaagcggcgtattgtcttatcagacaattccctat
gatgcagtaactgttggttccggtaacagaacacacccgctggatgctacaaccgtcgat
atgttctatgtattccaggacaggaatgtggtgtctaagcattttagtgatactgataca
cctgcggccctgacgattgcagatctctacgatgtctcgtcgaatccgccatcgtcagaa
gcagacaacgtcacttttggcaccaagcgcggctggtactacgatttcaatatggccggt
gaaaaaaccttgtctgcatcattgatttttgacggcaaggtatatttcacctcatttatc
cccccgaccgatcaaaccgtagatctggacgctggcatatgtgggttttcagggcaaggg
cgactctacgtatttgatttacataagggaaccaggacctacagccaggtttactatgag
ctgggtgaacgggtgccagacacgcctcaaattgttatccctgaacccaaggaaggggag
gaacctcaagcctacatcatcggtgtgggtaaaggtgagcaggatgaaaatgggcaatat
aaaggtactatcaacataggtaccggtcttgacacgaataaaatctactttcacgtggac
gagtaa
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