Shewanella khirikhana: STH12_00497
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Entry
STH12_00497 CDS
T06711
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_00497 (truB)
Enzymes [BR:
skh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
STH12_00497 (truB)
Transfer RNA biogenesis [BR:
skh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
STH12_00497 (truB)
Prokaryotic type
STH12_00497 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AZQ09644
UniProt:
A0ABM7CZN3
LinkDB
All DBs
Position
571469..572416
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AA seq
315 aa
AA seq
DB search
MARRTKGRNIDGIVLLDKPTGMSSNHALQRVKRLYNAAKAGHTGALDPLATGMLPVCLGE
ATKFSSHLLDADKRYLVTAKLGERTDTSDSDGEVVSTRPLNFTQDALDAALDSFRGDTMQ
VPSMFSALKYQGQPLYKYAREGKEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIR
TIIDDLGEKLGCGAHVIMLRRTAVAAYPYERMVTIEELEALVAQAEEQGVESKTLLDQLL
LPMDTAVADLPEVNIPDAVAPYLMNGNPVRVAGISGDSLMRITLGEARRFVGIGKMNDDG
QLAPKRLVVFTNDND
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgcaccaagggccgcaatatcgacggcatagtgctgctcgataaacccact
ggcatgagttccaaccatgcattgcagcgggtgaagcggctttacaatgcggccaaagcc
ggccacacaggtgcgctcgatccgctggcaactggcatgctgccagtgtgtctgggcgag
gcaaccaagttttcatcgcatctcttggatgccgataagcgttatctggtaaccgccaaa
ctgggtgagcgtaccgataccagtgattccgacggcgaagtggtcagcacccgaccgctg
aactttacccaggacgcactggatgcggcgctggacagtttccgcggcgataccatgcag
gtgccgtccatgttctcggcgctcaagtatcagggccagcccctgtacaaatatgcccgc
gaaggtaaggaagtgccccgcgaagcacggccaatcactgtgttcgagcttaactttatc
aagcttgaaggcgatgagctgacgctggatatccactgctccaagggaacttacatccgt
accatcatcgatgacctcggtgaaaaacttggctgtggtgctcacgtcattatgctgcgc
cgcactgccgtggcggcctacccctatgagcgtatggtcaccatcgaagagttggaagcg
ctggtagcacaggccgaagagcagggcgtcgagtccaagactctgctcgaccaactgctg
ctgccgatggacaccgcggtggccgacttgcccgaagtgaacattcccgatgcggtggcg
ccttatctgatgaatggtaatccggttcgggttgctggcatcagcggcgattcgctgatg
cggatcaccctcggtgaagccagacgcttcgttggcatcggcaagatgaacgacgatggt
caattggcgcccaagcgcttggttgtcttcacaaacgacaacgattaa
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