Shewanella khirikhana: STH12_00500
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Entry
STH12_00500 CDS
T06711
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_00500 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_00500 (pnp)
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_00500 (pnp)
Enzymes [BR:
skh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
STH12_00500 (pnp)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STH12_00500 (pnp)
Transfer RNA biogenesis [BR:
skh03016
]
Prokaryotic type
tRNA degradation factors
STH12_00500 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
AZQ09647
LinkDB
All DBs
Position
575107..577206
Genome browser
AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVD
PQIEPDIVAMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAG
TQGAVLMVESEAKSLPEEVMLGAVVYGHDQQQVVISAINEFAAEAGKPRWDWTAPVKNET
LVAQIKELAEEGLTAAYQIMAKQERYEAVGEVKKATIAKLQEANPEVNVREAADLLGSLE
KNVVRSRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSARPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASNN
GDATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLQLNQEVTVKVMEVDRQGRVRLSIKEAQTKEPAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctatcgtaaaaagttttgagtatggtcagcatacagtcaccctggaaacaggt
gtaatcgctcgtcaagccgatggtgccgttatggccagcatgggcgacactacagttctg
gtaactgttgtgggcaaaaaggaagcggacccaggccgtgacttctttccgctgactgta
aactatcaggagaagacctacgcagccggtaagatcccaggtggattcttcaagcgtgaa
ggccgtccttctgaagacgaaactctgattgcccgtctcatcgaccgtcctatccgtcct
ctgttccccgatgactttaccaacgaagtacaggtcatcatcacagtggtatcggtagat
cctcagattgagccggacatcgttgccatgattggtacctccgctgcgctggctatctcc
ggtattcctttcaacggtcctctgggcgctgcccgtgtgggttatgtgaacggcgaatac
gtactgaacccaggtgccgccgaactggctggcagtgaactggatctggtggttgccggt
acccagggcgccgtactgatggtggaatctgaagctaaatctctgccggaagaagtgatg
ctgggcgccgtggtttacggtcatgaccagcagcaggttgttatctctgccatcaacgag
tttgctgccgaagccggcaagccacgttgggattggactgcacctgttaagaacgaaact
ctggttgcgcaaatcaaagaactggccgaagaaggtctgactgccgcttaccagatcatg
gccaagcaagagcgttacgaagccgttggtgaagtgaagaaagccaccatcgccaagctg
caggaagccaatcctgaagtgaacgtacgtgaagccgccgatctgctgggtagcctcgag
aagaacgtagttcgcagccgcatcatcgctggcatgccacgtatcgatggccgcgagcca
gacatgatccgtgccctgtctgtaatggccggtgtactgccacgtacccacggcagcgcg
ctgttcacccgcggtgaaactcaggcgctggtaacctgtactctgggtaccgagcgtgat
gctcagaagattgactccatcatgggcgagcgcaccaaccgcttcatgctgcactacaac
ttccctccatactctgtgggtgaaaccggtatggttggctcgccaaagcgccgcgaaatc
ggtcacggcaagctggcatggcgtggtatcaatgcggtaatgccgtctgccgaagagttc
ccatactctgtacgtgtggtatctgaaatcaccgagtccaacggttcttcttccatggcc
tctgtgtgcggtacctctctggcgctgatggatgccggtgtacctatcaagacttccgtg
gctggtattgccatgggtctggtgaaagaaggcgacaacttcgtggttctgtctgacatc
ctgggtgacgaagatcacctgggcgacatggacttcaaagtagccggtacccgtgatggt
gttactgcactgcagatggacatcaaaatcgaaggtatcaccaaagaaatcatggaaatc
gctctgcaacaggcttacggcgcccgcgttcacatcctgaacgtgatggaccaggccatc
ggcagcgcccgtccagatatctctgacttcgcaccacgtatcaccaccatcaagatcaac
ccagagaagatccgtgatgttatcggtaaaggcggcgcggttattcgtgcgctgaccgaa
gaaaccggtaccaccatcgagctggaagatgacggtactgtgaagattgcctctaacaat
ggcgacgctacccgcgaagctatccgccgcatcgaggaaatcacctctgaagtggaagtg
ggccgtctgtacacaggtaaggttatccgtatcgttgacttcggtgccttcgtgaacatc
ctgcctggcaaagatggtctggtacacatctctcagatcagcgatgagcgtgtagccaac
gtatctgaccacctgcaactgaaccaggaagttaccgtgaaggtaatggaagtggatcgt
cagggtcgtgtgcgtctgtctatcaaagaagcacaaaccaaagagccagccgctgaataa
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