Shewanella khirikhana: STH12_00550
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Entry
STH12_00550 CDS
T06711
Name
(GenBank) hypothetical protein
KO
K02674
type IV pilus assembly protein PilY1
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
skh02044
]
STH12_00550
02035 Bacterial motility proteins [BR:
skh02035
]
STH12_00550
Secretion system [BR:
skh02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
STH12_00550
Bacterial motility proteins [BR:
skh02035
]
Pilus system
Pilus assembly proteins
STH12_00550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4P_PilY1
YdaS_toxin
Motif
Other DBs
NCBI-ProteinID:
AZQ09697
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Position
637549..641121
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AA seq
1190 aa
AA seq
DB search
MSNEFSKRFDSRLLPAARPRIAGFGSLQKLSKQLGGFTLALCAGLSSGLLRADDTSLYVY
ESSGRNDQRPQVLVIFDNSGSMDTEVKNANPSFTDSDNSVGSSERLYYTLDASETPPNPS
DANEKRYFTNNKNACAKSYDFLKEYGIFTGFWRTYAYSGQTGSWVEFPRGDGTTIRTVDC
YEDIQEKAYNNRGVHAQGLPVDGEGNRKGAQLYSWVDSGSTQTKKNQAYAKALKTGFGTG
QVVTVYTKEYLDWYHGSKTKVTRTRIDIAKEAVTNVLLTTPGVDFGLAIFNRNNTNSGRE
GGRIVAGIKPTPSTVTTKKDLIRTIPTSGTTWTPLCETLYEAYRYFGGLSVEFGDDDPTQ
SPGRDTSIIKPNGAYISPFKKCQNRAYIVYVTDGEPTRDAAADTDIDDLTGGVDKYTSWP
VSYLSSLSSWMNTHDVNPSMDGVQSVSTYTVGFSQGAAAAAELLRKTAEKGGGKYYDATD
VDDLQKSLMQVFKNILEKNASFTAPSVASNNFNRIQTFDSVYYSMFLPNRGPRWSGNLKK
FKVTSSGDIVDANNNSVIDSDGNIKKGACSHWSNATDCSQGDGNDVRIGGAAGMLQRMDS
SKRNLISNLNGMKPLNVTNARSKAGGNSELAAHLGVVEGEVENLLNWAKGVDVDDDDDDN
KVSEMRADIMGDPLHSKPLAINFGTNSKADIRVIVGTNHGVLHMFKDEDSKVSESWAFMP
WEMLPKLATLRENQASGVHSIYGIDGSPVAWVKTNSSGVERAWLFFGLRRGGNAYYGMDI
TDPDSPSLMWRIDGASTGMDLMGQSWSKPVVTFIPGRETSPVLIFGAGYSPSNKDVTEVG
TADSLGTGVFIVDAATGALVHAFGPNSSGNMTVMPGIRDSIPNEVAILDANNDGLTDRIY
ATDTGGNVWRMDLPGADPKDSNKRWTAFKFAALGGATEVTDRRFFAGPVVAQTAFNSTVE
YSTTENGSTSTVTSTQLVPYDAVVVGSGLRPAPQDTKREDMFFTLQDRNIGVRSFDSSSS
DRTPPQPLRITDLYDVTSAPPETKAQHIAFGRKRGWYYNFTRNGEKTLAAASIVKGRVFF
TSYVPGEAAAADTNQCLVSGKGYLYGFDLHKGIRSYTQTYIEMGESVPDTPQLVVPEGDA
MYLIGIGKAPEYMVKTRCENNNEHCDGCPPGDEKCIGGGMVTEKIYYYAN
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgagttttcgaagcggtttgattcacgcttattgccagcagccaggcctcgg
attgctggttttggttctctacaaaagctgtcaaagcaactggggggatttactctggcg
ctctgtgccggcctgtcatccgggttgctgagggctgatgatacctccttgtatgtttat
gaatcctcaggccgaaacgatcagcgtcctcaggttttggtgatcttcgataactccggc
agtatggataccgaggtgaaaaacgccaatccatcatttactgactccgacaacagcgtt
ggcagttctgagcgactttattacacactggatgcctcggaaactccgcccaatcccagt
gatgccaacgaaaaacgctatttcacaaacaataaaaacgcctgtgccaaatcctatgat
tttcttaaagaatacggcatttttaccggcttttggcgcacctacgcctacagcggtcaa
accggtagctgggttgagtttcctcggggagacggcacgaccattcgtaccgtggattgc
tacgaagacattcaggagaaggcttacaataaccgtggcgtacacgctcagggtttgccg
gtagatggagaaggtaaccgcaagggggctcagttatattcctgggtggacagcggcagt
acccaaacgaaaaaaaaccaagcctatgcaaaggccctgaaaaccggttttggtaccggg
caggttgttaccgtttataccaaggaatatctcgactggtaccacggctccaagaccaag
gtcacccgtacccgtatcgatatcgccaaagaggcggtaaccaatgtattgctgactacc
cccggggtggatttcggcttggcaatctttaatcgaaacaatactaactctgggcgcgaa
ggtggccgtattgttgctgggattaaaccgaccccgtcgactgtcaccaccaaaaaggac
ctcatccgaaccatacccaccagcggaacaacctggacgcccctatgtgaaaccctttat
gaagcttaccgatactttggtgggttatcggtggaatttggtgatgacgatcccacgcag
tcgccgggaagggataccagtatcattaaaccaaatggtgcctacatctcgccttttaag
aaatgccaaaatcgggcctacattgtttatgttaccgacggtgaaccgacccgcgatgct
gcagcagatacggatatcgacgacctgactggtggcgttgataaatatacttcatggcct
gtgagttacctgagttcgctctcctcctggatgaatacccacgatgtgaatcccagcatg
gatggagtgcaaagcgtctccacctacactgtgggctttagtcagggagcggcagcggcc
gcagagctgctgcgtaagacggctgaaaaaggcggcggaaaatactatgacgctaccgat
gtggacgacctgcaaaaatccctgatgcaggtgtttaaaaacattcttgaaaagaacgcc
agttttaccgcgccttcggtcgcaagtaacaactttaaccgtatccagacctttgattcg
gtttactattctatgttcttgcccaatcgtggcccgcgctggtcaggtaacctgaaaaag
ttcaaggtgaccagcagcggcgatattgtcgatgccaacaataacagcgtgatagacagc
gacggcaatatcaaaaaaggcgcctgttcccattggagcaacgccaccgactgcagccag
ggcgatggtaatgacgtacgtattggcggcgccgccggtatgctgcagcgcatggactcc
agcaaacggaacctgatttccaatctcaatggcatgaagccactgaatgtcaccaatgcc
cgcagtaaggccggtggcaacagtgagctcgctgcccaccttggggtggtcgaaggcgaa
gtggaaaacctgcttaattgggccaagggcgtggatgttgacgatgatgatgatgacaac
aaggtcagcgaaatgcgtgccgacatcatgggcgatccgctccactccaagcctctggca
attaactttggcaccaactcaaaggccgatatccgggtcatagtgggcaccaaccatggt
gtgctgcacatgttcaaggatgaagactccaaggtatccgagtcctgggcttttatgccg
tgggaaatgttgcctaaactcgctactctgcgggaaaaccaggcctcgggcgtgcactcc
atctatggtattgatggctcgccggtggcttgggtgaaaaccaacagcagcggcgttgaa
cgtgcctggctgttctttggcttgcgccgcggcggcaacgcctactatggcatggacatc
acagatccggattcccccagcctgatgtggcgtattgacggcgccagcaccggcatggat
ttgatgggccagagctggtccaagcccgtggtgacctttattcccggccgtgaaacctcg
cctgtgcttatctttggcgcgggctattccccatccaataaagatgtgaccgaagtaggg
actgcggacagcctcggcaccggagtatttattgttgatgcggcaactggcgcattggtg
cacgcctttggccccaacagcagtggcaatatgacggtgatgccgggcattcgcgacagc
attcccaacgaagtcgccatcctcgatgcgaacaacgatggtctgaccgaccgcatctat
gccaccgacacaggcggtaacgtctggcgtatggatttgcctggcgccgatcccaaagac
agcaacaagcgctggacagcgttcaagtttgcggcgcttggcggcgccacggaggtgact
gaccgacgcttctttgccggcccggttgtggcgcagacggcatttaacagcacggtagag
tacagcaccaccgaaaacggcagcacttcaacggttaccagcacccaactggttccttat
gatgcggttgtggtgggcagtggtctgcgtccggctcctcaggataccaaacgtgaagac
atgttctttaccctgcaggacagaaacataggcgtgcgctcgtttgacagttcatcctct
gacagaacaccgccgcagccgctgcggatcacggatttgtatgatgtgacctcggcaccg
cccgagaccaaggctcaacacatcgcctttggccgtaagcgtggctggtactacaacttt
acccgaaatggtgagaagaccctggcggcggcctctatcgtgaaaggacgggtatttttc
acctcttatgtaccgggcgaagcggcggctgccgacaccaatcaatgtttggtatcgggt
aagggctacctctatggctttgatttacataaggggatccgctcctatacccaaacctac
attgagatgggtgagagtgttcccgacaccccgcagctggtggtgcccgaaggcgatgcc
atgtacctgattggtattggaaaggcgccggaatatatggtgaaaacccgctgtgagaac
aacaacgagcattgtgacggctgtccacccggcgatgagaagtgcattggtggcggcatg
gtgactgagaagatttactactatgcgaactaa
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