Shewanella khirikhana: STH12_00579
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Entry
STH12_00579 CDS
T06711
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_00579 (truD)
Enzymes [BR:
skh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
STH12_00579 (truD)
Transfer RNA biogenesis [BR:
skh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
STH12_00579 (truD)
Prokaryotic type
STH12_00579 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AZQ09726
LinkDB
All DBs
Position
672395..673486
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AA seq
363 aa
AA seq
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MTELTFLYGKPAVSADIRTHNSDFQVKEILPFLPDGEGEHHLLHIRKDGLNTAQVAEMIS
KFAKVHPKEVTFAGQKDKNAITEQWFGVRIPGKDTPDWAAMSNEQMQVLSFARHGKKLRT
GALSGNRFTLVLRNVSDPQELVTRLEQVRSGGVPNYFGEQRFGHDGGNLVKARQMFEGRK
VKDRNKRSLYLSAVRSELFNQVVSARLARQDASGLGLLEGDCVMLSGSRSFFVAETWDET
LKGRLAEKDIQLSAPLWGRGEMLAKGDAAEFEASVLAAYELERNGLEKEGLTQERRALLL
RPEQLSFKLDGDTLTLDFCLPAGAFATSVLRELCEYSDVKELEWRRAVAERQAQEAANAP
VGE
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgactgagctgacttttctttacggcaagccggctgtaagcgccgatatccgcacccac
aacagcgactttcaggtgaaagaaatcctgccattcctgcccgatggtgaaggcgagcat
cacttgctgcatatccgcaaagatggcctgaacacggcgcaggtggcggagatgatttcc
aaatttgccaaggtgcatcccaaggaagtgacctttgccggtcaaaaagacaaaaatgcc
attaccgagcagtggtttggggtgcgcattcccggcaaggataccccggactgggccgca
atgagcaatgagcagatgcaggtgttgtcgtttgcccgccatggcaaaaagctgcgcaca
ggcgcactttcaggcaatcgttttactttggtgctgcgcaacgtttccgacccacaggaa
ctggttacccgcctcgagcaggtgcgctctggcggcgtgcccaactatttcggtgagcag
cgtttcggccatgatggtggcaatctggttaaggcgcgacagatgtttgaaggccgcaag
gtgaaagacagaaataagcgcagcctgtatctgtcggcggtgcgctctgagctctttaat
caggtggtcagcgcccgtttggcaaggcaagatgcttccggtttggggttgcttgagggg
gactgtgtgatgctttctggcagccgcagcttctttgtggccgaaacttgggatgagacg
ctcaaaggccgtctggctgagaaagatattcaactgtcggcgcccctgtggggccgcggt
gagatgctcgccaagggcgacgccgccgagtttgaagcgtcggtgctcgcggcttacgag
cttgagcgcaacggccttgaaaaagaaggcctgacccaggagcgccgcgcgctgctgctg
cgccctgaacagctgagctttaaactggacggcgataccctgactctggatttctgcttg
ccggctggcgcctttgctaccagtgtgctgcgagagctttgtgagtacagcgacgtgaaa
gagctggagtggcgccgcgcggtggccgaacgtcaggcacaggaggccgctaatgcgcct
gttggtgagtaa
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