Shewanella khirikhana: STH12_00600
Help
Entry
STH12_00600 CDS
T06711
Symbol
gcdB
Name
(GenBank) Glutaconyl-CoA decarboxylase subunit beta
KO
K20509
carboxybiotin decarboxylase [EC:
7.2.4.1
]
Organism
skh
Shewanella khirikhana
Pathway
skh00362
Benzoate degradation
skh00620
Pyruvate metabolism
skh00650
Butanoate metabolism
skh01100
Metabolic pathways
skh01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00620 Pyruvate metabolism
STH12_00600 (gcdB)
00650 Butanoate metabolism
STH12_00600 (gcdB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
STH12_00600 (gcdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
skh02000
]
STH12_00600 (gcdB)
Enzymes [BR:
skh01000
]
7. Translocases
7.2 Catalysing the translocation of inorganic cations
7.2.4 Linked to decarboxylation
7.2.4.1 carboxybiotin decarboxylase
STH12_00600 (gcdB)
Transporters [BR:
skh02000
]
Other transporters
Primary active transporters [TC:
3
]
STH12_00600 (gcdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OAD_beta
Motif
Other DBs
NCBI-ProteinID:
AZQ09739
LinkDB
All DBs
Position
689243..690373
Genome browser
AA seq
376 aa
AA seq
DB search
MEGLMAFWAETGIAHFTLGQLLMMAVGLVLLYLAIGKGFEPLLLLPIGFGAVLANIPNAG
FTDEGGLLYYLYHVGLETGIFPLLIFLGVGALTDFGALIANPKTLLLGAAAQFGIFATLL
GAIGLNLVPGFEFSMKDAAAIAIIGGADGPTAIFLSTKLAPELLGAIAVAAYSYMALVPI
IQPPIMRALTTKEERAIKMEQLREVSKMEKVLFPLMVLGLTILFLPAATPLVGMFCLGNL
MRESGVVDRLSNTAQNELINIVTIFLGLAVGSKLSAEQFLRVETLGILVLGAVAFSIGTA
AGVLMAKLLCKLSGGKVNPLIGAAGVSAVPMAARVANKVGLEANPHNYLLMHAMGPNVAG
VLGSAVAAGILLAVLG
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggaaggattgatggctttttgggccgaaacaggtattgcccactttacactggggcaa
ctgctgatgatggcggtagggctggtgctgctgtatctcgccattggcaagggatttgag
cccttactgctgctgccgattggttttggcgctgtgcttgccaatatccccaacgccgga
tttaccgacgaagggggcttactctattacctctaccacgtggggctggaaaccggcatc
ttcccgctgctgattttcctcggcgtcggggcgctgactgactttggcgcccttattgcc
aaccccaagaccctgctgctgggggcggcggctcagttcggcatttttgccaccctgctg
ggggcgattgggctcaacctggtgcccggctttgagttttccatgaaggatgctgcggcc
attgccattattggcggcgccgatggaccaacggccatcttcctctctaccaaactggcc
ccagagctgttgggtgccattgcggtggccgcttactcctacatggcgctggtgcccatt
atccagccgcccatcatgcgggcgctcaccaccaaggaagagcgtgccatcaagatggag
cagctgcgggaagtgagcaagatggaaaaggtgctgtttccgctgatggtgctggggctg
acaatcctgtttttgcctgcggcaacgcctttggtgggcatgttctgccttggcaacctg
atgcgtgaatccggcgtggttgaccgtctgtccaacaccgctcagaacgagctgattaac
atagtcaccatcttcctcgggctggcggtgggctccaaactgtcggccgagcagttcctg
cgggtcgagactctgggcattctggtgcttggcgccgtggcgttttccattggcactgcg
gctggggtgctgatggccaagcttttgtgcaaactcagtggcggcaaggtgaatccactg
attggcgctgccggggtgtctgccgtgccaatggctgcgcgggtggcgaacaaggtgggg
cttgaagccaatccgcataattacctgctgatgcatgccatggggcccaatgtggccggg
gtgcttggcagcgcggtggcggccggtattctgctggctgtgctgggttag
DBGET
integrated database retrieval system
