Shewanella khirikhana: STH12_00712
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Entry
STH12_00712 CDS
T06711
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03030
DNA replication
skh03430
Mismatch repair
skh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STH12_00712 (dnaE)
03430 Mismatch repair
STH12_00712 (dnaE)
03440 Homologous recombination
STH12_00712 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skh03032
]
STH12_00712 (dnaE)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_00712 (dnaE)
Enzymes [BR:
skh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
STH12_00712 (dnaE)
DNA replication proteins [BR:
skh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
STH12_00712 (dnaE)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
STH12_00712 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AZQ09851
UniProt:
A0ABM7D0H5
LinkDB
All DBs
Position
821649..825122
Genome browser
AA seq
1157 aa
AA seq
DB search
MSQPKFVHLRVHSDFSMTDGLAKVKPILGKAEALGMAAIALTDQNNLCGLVKFYGTCHEK
GIKPIIGADFWMLVPGFEEEFCAITVIAMDNEGYQNLTQLISHAYLRGQVQGRVAIDQEW
LLEFNQGILLLSGAKEGDLGKALLKGNAPQAASLTEFYQTHFPNRYFIELIRTGRADEET
YLHMAVKHAAEFDLPVVATNQVVFLNPEEFEAHEIRVAIHDGFTLADNRRPKKYSDQQYL
RSEDEMCELFSDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPTGDLSTEDFLVVRSKEGL
EERLEFLFPDPEVRAERRKEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPG
LQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKMGKDPVDIAAIPLVDSKSFAML
KRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDATWQHECLKPILEPTYGIILYQEQVMQIAQTLSGYTLGGADMLRRAMGKKKPEEM
AKQRAVFQKGAEDNNVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPS
EFMAAVMSADMDNTDKIVTLVDECERMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGAIKG
VGEGPVEAILEARKDGPFKDLFDFCARIDLKKLNRRVIEKLICSGALDSLGPHRASMMAT
LPEAMQAADQHAKAQATGQHDMFGLLNDHQEDAKQQFVECMPWPDKVWLEGERETLGLYL
TGHPINQYLKELKNYTSGRLKDIHPTDRGKTVKAAGLVVASRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTARNIIDISEARSHFAK
ALQVDILSSQCPEAVMDAFFEALSPWKGGAVPLVVNLQRDDASGRLQLGDEWRVNPTDEL
VLALQTLLGPDKVRIDF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcccaagtttgttcacctgcgagtgcactccgacttctccatgaccgatggt
ctggccaaggtcaaacccatcctcggcaaagccgaagccctgggaatggcggcgattgcg
ctcaccgaccagaacaacctctgtggtctggtaaagttctatggcacctgccatgaaaag
ggcatcaaacccattatcggcgccgacttctggatgttggtgccggggtttgaagaggag
ttttgtgccatcacagtgattgcgatggacaatgagggctaccagaacctgacccagctt
atcagccacgcctatctgcgtggtcaggtgcagggcagggtggctatcgatcaggaatgg
ttgctggaatttaaccaaggcattttgctgctctcgggcgccaaagaaggcgaccttggc
aaggcgctgcttaagggcaatgcccctcaggccgccagtctgaccgagttttatcagacg
catttccccaatcgctattttattgagcttatccgtaccggccgtgcagacgaagaaacc
tacctgcacatggcggtgaagcacgctgccgaattcgacctgccggtggtggccaccaac
caggtggtttttttgaacccggaagagtttgaggcccacgaaattcgggtggccattcat
gacggctttaccctggccgataaccgccgtcccaagaaatacagcgaccagcaatatctt
cgcagcgaagatgagatgtgtgagctattttccgacatcccagaagccattgccaatacg
gtggaaattgccaagcgctgtaacgtgactgtgcgcctcggcgagtacttcctgcccaac
ttccccacaggcgatttaagtaccgaagactttctggtagtgcgctccaaagaagggctg
gaagagcgtctcgagttcttgtttcctgatcccgaggtgagagcggagcggcgcaaagag
tacgatgagcgcctcgatatcgaacttaaagtaatcaaccagatgggcttccccggttac
ttccttatcgtaatggagtttatccagtggggtaaggataacggcattcccgtgggtccc
ggacggggctcgggtgcgggctctttggtggcctatgcgctgaaaattaccgaccttgat
ccactggaattcgacctgctgttcgagcgctttttgaaccctgaacgggtatctatgccc
gacttcgacgtcgacttctgtatggacaggcgcgatgaagtgattgatcacgtggccgag
ctttacggccgcgaggcggtgtcgcaaatcattaccttcggtaccatggccgccaaggcg
gtggtacgtgacgtgggccgggtgctgggccactcctacggctttgtagaccgcatctcc
aagatgatcccgcctgagcctggcatgaccctggccaaggcctttgaggtcgaacccggg
ctacaggaagcctatgatgccgatgaggaagtgaaagaccttatcgacatggcgcgcaag
cttgagggcgtaacccgtaacgccggtaagcacgccgggggcgtggtaatcgcgcccacc
aagatcaccgacttctcaccgctttattgcgacgccgagggtaaaaacccggttacccag
ttcgataagaacgatgtggaatacgcaggtctggtgaagttcgacttcctcggtcttcga
accctgaccattatcgactgggcccttgggatgataaacccgaggcttgccaaaatgggc
aaggacccggtggacattgccgccattccgctggtggactcaaaatccttcgccatgctc
aagcgctacgaaaccacggcggtgttccagcttgaatcccgcggtatgaaggaccttatc
aagcgcctgcagcctgactgctttgaagacatgattgcactggtggccctgttccgtccg
gggccgctgcagtcgggcatggtggataactttatcgaccgtaagcacggccgcgaggag
atttcctaccccgacgccacctggcagcacgagtgcctgaaaccgattctggaacccacc
tacggcatcatcctgtatcaggagcaggtgatgcagattgcccagacactctccggctat
accctcggcggcgccgacatgctgcgccgcgccatgggtaagaaaaagcccgaagagatg
gccaagcagcgggctgtgttccagaaaggggccgaagacaataacgtcgatggcgaactc
gccatgaaaatcttcgacctggtggaaaagttcgccggttacggttttaacaagtcgcac
tcggccgcctatgcactggtgtcgtatcagactctgtggctcaaggctcactatccgtct
gagtttatggcggcggttatgtcggcggatatggacaacaccgacaagattgtaaccctg
gtcgatgagtgtgagcgcatggggcttaagatcatcccgccggatgtgaacaagggtctg
tttaagttcaccgtggacgaggatctcaacatcgtttacggcatcggcgccatcaagggc
gtgggtgagggaccggttgaggcgattcttgaagcccgtaaagacggccccttcaaagac
ttgttcgacttctgcgcccgcatcgatttgaaaaagctaaaccgccgggtgattgaaaaa
ctgatttgttccggcgcgctggatagcctggggccacaccgcgcctccatgatggcaact
ctgcccgaggcgatgcaggcggcggatcagcacgccaaggcccaggccaccggccagcac
gatatgtttggtctcttgaacgaccatcaggaagatgcaaaacagcagtttgtggagtgt
atgccctggccggataaagtctggctcgagggcgagcgtgagaccctggggctgtatctt
accggtcaccccatcaatcagtatctgaaggagctgaaaaactacacctccgggcgcctg
aaagatattcaccccaccgacagaggcaagacagtcaaggccgcaggcctggtggtggca
agccgggtgatgctcaccaagcgtggctccaagatgggcctgctgactttggatgacaag
agcgcccgcctcgaagtgatgctctttactgaagcgttcgagaagtttggtcatctcttg
gaaaaagaccgcattcttatctgcgaaggggaagtgagcttcgatgacttctccggcggc
aatcgcatgaccgcccgcaacattatcgatatcagtgaggcccgcagccattttgccaag
gcgctgcaggtggatatcctgtcgagccagtgtccggaagccgtgatggatgctttcttc
gaggccctcagtccctggaaaggtggcgccgtgccgctggtggtgaatcttcagcgtgat
gatgccagtggtcgcctgcagcttggtgatgagtggcgggtgaaccccaccgatgagctg
gtactggcgctgcaaaccctgctggggccggataaggtcaggattgatttctga
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