Shewanella khirikhana: STH12_00796
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Entry
STH12_00796 CDS
T06711
Symbol
ung_1
Name
(GenBank) Uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
skh
Shewanella khirikhana
Pathway
skh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STH12_00796 (ung_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_00796 (ung_1)
Enzymes [BR:
skh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
STH12_00796 (ung_1)
DNA repair and recombination proteins [BR:
skh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
STH12_00796 (ung_1)
Prokaryotic type
STH12_00796 (ung_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AZQ09932
LinkDB
All DBs
Position
complement(937748..938404)
Genome browser
AA seq
218 aa
AA seq
DB search
MDWQQLLGAEKRAPYFQDTLRYVDKRIHAGVTVYPPKADIFNAFRYTAFEQVKVVILGQD
PYHGPNQAHGLCFSVKAPCPPPPSLQNMFIELANSIPGFVVPAHGDLSAWAHQGVLLLNT
VLTVERGQAHSHAHLGWERFTDAVIRGLSEHRAGLVFLLWGSHAGKKASLIDANKHLVLR
SPHPSPLSANRGFFGCNHFAKANEALICQNLTPIDWRL
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
gtggattggcaacagcttcttggcgctgaaaaacgcgccccctattttcaggacaccttg
aggtatgtcgacaaacgcatccatgccggagtgaccgtctatccgcctaaagccgacatc
ttcaatgcctttcgctacaccgcctttgagcaggtgaaggtggtgattttgggacaagac
ccttaccacggccccaatcaggcccacgggctgtgcttctcggtcaaggctccctgcccg
ccgccaccgtcgctgcagaatatgtttatcgagctggcaaactcaattccgggctttgtg
gtgccagcccatggcgacctaagcgcctgggcccatcagggggtgttgctgctcaatacc
gtgctgaccgtggagcggggccaagctcactcccacgcacacctaggctgggagcgcttt
accgatgcggtgatccgcggcctgagtgagcacagagccgggctggtgtttctgctttgg
ggcagtcatgcgggcaagaaggcgagtttgattgatgccaacaaacatctggtgctgcgc
tcgccacatccatcgcccttgtcggcaaatcggggctttttcggctgtaaccactttgcc
aaagccaatgaggcgttgatctgccagaacctcacccccatcgactggcgcctgtag
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