Shewanella khirikhana: STH12_00835
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Entry
STH12_00835 CDS
T06711
Symbol
sbcD
Name
(GenBank) Nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_00835 (sbcD)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STH12_00835 (sbcD)
Archaeal homologous recombinant proteins
STH12_00835 (sbcD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
AZQ09971
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Position
980086..981228
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AA seq
380 aa
AA seq
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MRFIHTSDWHLGRTLHNQSLLDEQAGMLQSLLELIRIHEVDALLIAGDIFDRSVPPAAAV
TLLDDFLDLVTTSLGVAVVAIGGNHDGQERIAFGARQMAGAGLYIHGPVSAEVKPVRIDG
KDGSAFFYPIPYAEPALVRHLLDEDVHTHEEAMAALLGQVQAHDSQGLPKVVLSHCFLDG
GSESDSERPLSIGGADRISPSLFAPFDYVALGHLHGPQYKGAEHVRYSGSPLKYSFSEQN
QKKSVTLVELKPNQPPVIELLPITPKRDVRVIEGLLAELLERGKTDAAREDYLMVRLLDT
QAILEPMAKLRAVYPNVLHLERTGLMQARQVDGPGRERIQKSELAMFEDFFSQVQGEQMT
EPQRQLMTELISSLHKGDAQ
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagattcatccacacctcggattggcaccttggccgcacgctgcacaatcaatcgctg
ctggacgagcaggccgggatgttgcaaagcctgctggagcttatccgcatccatgaggtg
gacgccttactgatagccggcgatatctttgaccgctcagtgccgcctgcggccgcggta
accctgctggatgactttctggacctggtcaccacaagcctgggagtggccgtggttgcc
attggcggcaaccatgacggtcaggagcgcatcgcattcggtgcgcggcagatggccggg
gctgggctctatattcacgggccggtgagcgccgaggtaaaaccggttcgcatagatggc
aaagacggcagcgcctttttctatcctattccttacgccgagccagcgctggtcaggcat
ctgcttgatgaagatgtgcacacccacgaagaggccatggcggcgctgcttgggcaggta
caggcccacgacagccagggcttgcccaaagtcgtgctcagtcactgctttttggacggt
ggcagcgagtcggattcagagcggccgctgtccatcggcggcgccgatcgcatctcgcca
tcgttatttgcacccttcgattatgtcgcccttgggcacctgcatggaccccaatacaag
ggcgccgagcatgtgcgttattctggctcgccgctcaaatattccttcagcgagcaaaac
cagaaaaaatcggtgaccttggtggagcttaagcccaatcagccacctgttatcgagctg
ctgccgattacgccaaaacgcgatgttcgggtgattgaaggcctgctggctgagctgctt
gagcgaggaaaaaccgatgccgcccgggaggactacctgatggtgcggctactcgacacc
caggcgattctggagcccatggccaaactcagggcagtgtatcccaatgtgctgcatctg
gagcgcacggggctgatgcaggcccgtcaggtggatgggccgggcagggagcgcattcaa
aagagcgaactggccatgtttgaagattttttcagtcaggtacagggcgagcagatgaca
gagccccagcggcaactgatgacagaacttatctcgtccctgcacaagggggatgcccaa
tga
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