Shewanella khirikhana: STH12_00836
Help
Entry
STH12_00836 CDS
T06711
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_00836 (sbcC)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STH12_00836 (sbcC)
Archaeal homologous recombinant proteins
STH12_00836 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Occludin_ELL
Transglut_prok
Med9
ABC_tran
Laminin_II
Motif
Other DBs
NCBI-ProteinID:
AZQ09972
UniProt:
A0A3S9L2Z8
LinkDB
All DBs
Position
981225..984287
Genome browser
AA seq
1020 aa
AA seq
DB search
MKPLTLEMTAFGPFADTQRLDFTALGDWPLFLINGPTGAGKTTILDAICFALYGKTTGNE
REGTQMRCDSAPDSMLTEVVFEFGLADKRYRVRRTPEQQRAKKSGDGYTVQKSEAFLERL
EGDSAVPMASAKVTEVTAEIEDLLGLEVEQFRQVMVLPQGQFRKLLLADSKEREAIFGQL
FQTSIYKRIEDSLKQRALELKAKARELEARRAGILETAGAESLDALNASISALAPELASA
ADAKLAAETKLAAAKAGRQAAEARLREFTALNDTRARLEAENARAESMAALGIQLERATL
AESLAGAWHAWDEREKERLSAETAAAQAVEEAKQAEAALAHAREAASALPELDAKRQQLR
ADAERLAEWRPRMSRLSALSEAIATLGQGLSALDANIAHVRSQLGDTQSRMAQLTQQRRD
LSALASSAGSLEAALVQQIQAFERQQQFIEKERQAHKLGAELSRLEADGRQAKVNQEQLT
RARELLELAWHQGQAAILAARLLPGEPCSVCGSQDHPNPAHHDGMLPGDDELAAARDAEQ
QAREVLSRARSDYKAQKQRLDAMAQELTQDAAALGDALATSLEQKQHLLGQSREACQNAR
AAQQSLQALDAELEQLDSAQKQLMANIDELQRQREQQSGELQKASGEKDSLSSAIPELCQ
RLGSEQALDAHLAMLSQQIDAMSAQIEALQTRQKEAETRQTQCNERRDALSRALSEAGSR
QAAAKARFDTELAAKGFDDVQSFTQARMSADEMSAAKNSIANWQQQLAGLKERLAAQQEA
LGDALPPDLIELAAAEASAQEEFSQSNQRWQSLNDTQVMYSRARAQLGSEAEAAARLDAD
YALIGTLSDAASGQTGGRISLQRFVLGVLLDDVLIEASNRLHLMSKGRYRLIRKEDKAKG
NRASGLDLDVEDAYTGKLRPVATLSGGESFMAALSLALGLSDVVQAYAGGIKLDTLFIDE
GFGSLDQDSLELAIRTLVDLQSAGRMIGVISHVTEMKEQIQTQVDISKGNDGSKISLTLP
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgctgacccttgagatgaccgcctttggcccctttgctgacacccaaaggctg
gattttaccgcccttggcgactggccgctgtttctgattaatggccccactggcgcgggc
aagaccactattctcgatgccatttgttttgcactgtatggcaagaccacaggcaatgag
cgtgaaggtacacagatgcgctgcgatagtgcccccgacagcatgctcaccgaagtggtg
tttgagtttggtctggcggataagcgctatcgggtaaggcgaactcccgagcagcagcgg
gccaaaaaaagcggcgatggttacactgtgcaaaagagtgaagccttcctcgagcggctt
gaaggcgacagcgccgtgcccatggcctctgccaaggtcaccgaggtgaccgccgagatt
gaagatttgctcgggcttgaagttgagcagtttcgtcaggtgatggtgctgccccagggg
cagtttcgaaagctgctgctggccgactccaaagagcgcgaggccatcttcggtcagctg
tttcaaaccagcatttataaacgtatcgaagacagccttaagcagcgcgcgctggagctc
aaagccaaagcccgtgaactcgaggcgcgacgagctggcattctggaaaccgcaggcgcc
gaaagcctggatgcgctgaatgcctccatatcagctcttgcgcccgagcttgccagtgct
gcagacgccaaactcgccgccgagaccaagctcgccgccgccaaagccgggcgtcaggcg
gcagaagccaggctgcgtgaatttaccgccctgaatgacaccagggcgcggctcgaggcc
gaaaacgccagggccgagtctatggccgctctgggcattcagcttgagcgcgcgacactt
gccgagtcccttgctggtgcatggcatgcctgggatgagcgcgaaaaagagcgtttaagt
gctgaaaccgcagcagcgcaagccgttgaagaggcaaaacaggccgaggcggcactggca
catgccagggaggcggcatccgctctgcccgaattggatgcaaaacgccagcagctcagg
gcggacgccgaaagactggctgagtggcgcccaagaatgagcagactgtcggcgctgagt
gaggcaattgccacgcttggacaggggctgagtgcacttgatgccaatattgcccatgtt
cgcagccagcttggcgatacccagagccgcatggcacagcttacccagcagcgacgcgac
ctgtcggcgctggcaagcagcgccgggagccttgaggccgcgctggtgcagcaaatccag
gcgtttgagcgtcagcagcaatttattgaaaaagagcggcaggcgcacaagcttggtgcc
gagctttcacggcttgaggctgacggccgtcaggccaaggtcaatcaggaacagctgacc
cgtgcccgcgaactgctggagcttgcctggcatcaggggcaggccgcgattctggcggca
aggcttttacccggcgagccgtgttctgtgtgtggcagtcaggatcacccaaacccagct
caccatgacggtatgctgccgggcgatgatgaacttgccgctgccagagacgccgagcag
caggcgagggaagtgcttagccgtgcccgctcagattacaaggcgcaaaaacagcgtctc
gatgccatggcgcaggaactgactcaggacgccgcagcgctgggtgatgcgctggccacc
agtcttgagcaaaagcagcacctccttgggcaaagccgggaagcgtgccaaaacgccagg
gcggcccagcaatccttacaggcgctggacgctgaacttgagcagctcgacagcgctcaa
aaacagttgatggccaacatagatgagctgcagcgtcagcgcgagcagcaatccggtgaa
ctgcaaaaggccagcggtgagaaagacagcctcagcagtgctattcccgagctgtgtcag
cgcctcggcagtgagcaggcgctcgatgctcatcttgcgatgctgtcgcagcaaatcgat
gctatgagcgcgcaaatagaggcgctgcaaacccggcaaaaagaggccgaaacccgtcaa
actcagtgtaatgagcgccgggatgcgttgagccgggccctcagtgaggctggcagccgc
caggcagccgccaaagcacgttttgataccgagcttgcggccaagggctttgatgatgtg
caaagttttactcaggcacggatgagcgcagatgagatgagtgctgccaaaaacagtatc
gccaactggcagcagcagctcgcggggctcaaagagcgcctcgccgctcagcaggaagcc
cttggcgatgctctgccaccggatttgattgagcttgccgctgctgaagccagcgcccag
gaggagttcagtcaatccaatcagcgctggcagtcactcaacgacacccaggtaatgtac
agccgcgcccgggcgcagcttggcagcgaagccgaggctgccgccaggcttgatgccgac
tatgcgctgattggtaccctgtctgatgccgccagcggccagaccggcgggcgcatcagt
ttgcagcgttttgtacttggggtgctgctcgatgatgtgctgattgaggccagcaatcgt
ctgcatctgatgagcaagggccgctaccggcttatccgcaaagaagataaggccaaaggc
aaccgggcgtccggactggatctggatgtggaagatgcctacacaggtaagctcagacct
gtggcaaccctcagtggcggcgagagctttatggcggcattgtcgctggcgctggggctg
tcggatgtggtgcaggcctatgccggaggcattaagctcgacaccctgtttattgacgaa
ggctttggcagcctggatcaggactctctggagcttgccatcagaaccttggtggactta
cagtcagccgggcgcatgattggagtgatttcccatgtcaccgagatgaaagagcagatc
cagacccaggtggatatcagcaagggcaacgacggcagtaaaatcagcctcacgcttccc
tga
DBGET
integrated database retrieval system
