Shewanella khirikhana: STH12_00881
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Entry
STH12_00881 CDS
T06711
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03030
DNA replication
skh03430
Mismatch repair
skh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STH12_00881 (dnaX)
03430 Mismatch repair
STH12_00881 (dnaX)
03440 Homologous recombination
STH12_00881 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skh03032
]
STH12_00881 (dnaX)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_00881 (dnaX)
Enzymes [BR:
skh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
STH12_00881 (dnaX)
DNA replication proteins [BR:
skh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
STH12_00881 (dnaX)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
STH12_00881 (dnaX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_5
AAA
AAA_22
AAA_16
RuvB_N
AAA_5
AAA_14
ResIII
PIF1
AAA_18
TsaE
AAA_2
AAA_7
AAA_assoc_2
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AZQ10017
UniProt:
A0ABN5TUG6
LinkDB
All DBs
Position
1025668..1028565
Genome browser
AA seq
965 aa
AA seq
DB search
MSYQVLARKWRPANFAQVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK
GLNCETGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF
KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ
EQIQQQLAAVLGGEDVGFDEPALQLLAKAAAGSMRDALSLTDQAIAFGAGEVRLEQVQTM
LGAIDKGQIAALFDALCQGEIEPLLSSARSALGFGADADEVLRALLELLHQISLAQFAPA
TAQVSDNTEVVLAWAQVLKPEQVQLFYQILLAGRKDLAFAPTPAIGLEMTLLRAVGFVPE
KPVKTWQAGEGLPQVASLAAAAPAAAIVAATPAATSTAATSTTATSTAATSANVSEPAAT
PAAVEPVKPALDPAKPPKKPAVAVVSDDNPLPQVKKPLPQVDNSAGEEAQAADKPGADII
TEASTDADTHDEAALLAEQTLLMSQAESQGFVGYGEAADYAEYDNGSLFASDSHDYEAFA
SGEDLFAEPGQSSQVLTEPGQAEPAAQTQNSAADVSSAPSPVTEPSPETCPSAQAGAAFG
DDILDAVLAARDDLLAGLSEEAKEDESKKSPGSFARRQLATAKASADSAATAESTKAPEP
AATAPTATAQNVDAADANEAHHASQAHASQAVSAIDDRPPWEEPIKATEAPTQQAAVAES
QADGKDSSNAEGKAATADIAPSEQAPSERANAQLPEPTAQPEPVPQPESAAQPESVSLQA
AAGEPQMASAVQTPPQAQQPVSAVSGDAINGDETDLRWYKLMGALEIGGRVRQLAVNSVC
LEWTNPIPLVLKQDQKHLAAPVAIEQLNEALSNALGHPAWIALEVGEVPGRETPLDIRGR
FHQELLRNAKTALGTDAVAQRLMQQAGAWIDEDSISYPQDRLAARGRALPQPPALAETQD
EIASS
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatcaggtgttggccagaaaatggcgccctgccaattttgcccaggtcgtgggg
cagtcccatgttctgcatgccctgaccaacgccctcggtcagcaacgattacatcacgct
tatctgtttaccggcacccgcggtgtggggaagaccagtttggcgcgtctgtttgccaag
gggctgaactgtgaaaccggcattactgccactccctgtggtcagtgcagcgcctgccgt
gaaattgccgaaggccgctttgtcgatttgattgaagtggatgcggcgtcacgcaccaag
gtggatgacacccgggaaatcctcgataacgttcaatatcgccccagccgaggccgcttc
aaggtgtaccttatcgacgaggtgcacatgctgtccaagagcagcttcaatgcgctgcta
aagaccctcgaagagccccctgaacacgttaaattcctgctggctaccacagatccgcaa
aagctgccggtgactgtgttgtcccgctgtttgcaattcaatttaaaggcgctgacccag
gagcaaatccagcagcagctggctgccgtgcttggcggcgaggacgttggctttgatgag
cctgcgctgcaactgctggctaaagctgccgcaggcagtatgcgcgatgccttgagtctt
accgatcaggccatcgcctttggcgccggtgaagtgcgcctcgagcaggtgcaaaccatg
ctgggcgccatcgacaaggggcaaatagccgcgctgttcgatgccctgtgtcagggcgag
attgagccgctgctcagtagcgcccgctcggctctgggttttggcgccgatgccgacgaa
gtgctgcgggcacttttggagttgttgcatcaaatcagtctggcgcaatttgccccggcg
acggcgcaggtgagtgataacaccgaagtggtgctcgcctgggcgcaggtgctcaagcca
gagcaggtgcagctcttctatcagattttactcgccggtcgaaaagatttggcctttgcg
cccactccggccatcggtctggagatgacgctgcttcgcgccgtgggttttgttcctgaa
aaaccagtaaaaacctggcaggcaggcgaagggctaccccaggtcgccagcttagccgct
gcggcgcctgctgcagcaatagtggctgcaacacctgctgctacatcaacagccgctaca
tcaacaacagctacatcaacggccgcgacatcagcaaacgtatctgaacctgctgcgact
cccgcagcggttgaacctgtaaaacctgcccttgatcctgccaagccccccaaaaagcca
gcagtggccgtggtgagtgatgacaatccgttaccgcaggtgaaaaagccgttaccgcag
gtggataactcagccggggaagaggcacaagcagcagacaagcctggcgctgacattatt
accgaggccagcacggatgcagatacccatgacgaggctgcgcttttggccgagcagaca
ctgctgatgtcccaggccgaaagtcagggctttgtcggctacggtgaagcggctgattat
gccgaatatgataatggttcgctgtttgcgtctgactcccatgactatgaagcctttgcc
tctggtgaggatttgtttgccgagcctggtcaaagcagccaagtattgactgagcccggg
caggcagagcctgcagcgcaaactcaaaacagcgctgcggacgtaagttctgctccaagc
cctgtaactgagccaagccctgaaacttgcccttcagctcaggcgggcgcggcctttggt
gacgacattctcgatgccgtgctggcggcacgggacgacctgctggctgggctcagtgag
gaggcgaaagaggatgaatcaaaaaagtccccgggcagtttcgcccgtcgtcaattggcg
acggcaaaggccagcgctgactctgccgcaactgctgaatcgaccaaagcgcctgagcct
gctgcgacagcgccgactgcgactgcccagaatgttgatgctgctgatgccaacgaagct
catcatgccagccaagctcatgccagccaggccgtgagtgcgattgatgaccggccgccc
tgggaagaacccatcaaagccactgaggcgccgactcagcaagccgctgtcgctgagagt
caggcagacggtaaagactcctccaatgccgagggtaaggccgctacagctgatatagcg
ccaagtgagcaagctccgtctgagcgggcaaatgcacagctgccagagcctacagctcag
ccggaacccgtgcctcagccagaatctgctgctcagccagagtctgtatctttgcaagcg
gctgcgggagagcctcaaatggcttccgcagtacaaacgccgccacaggcacagcagcca
gtgtccgctgtatctggcgatgctattaatggcgatgaaaccgacttgcgctggtacaag
ttaatgggcgcgttggagattggtggccgggtgcgtcagctggcggtgaattcagtgtgt
cttgagtggaccaatcccattccattggtgctgaagcaagatcagaagcacctggcggcg
cctgtggcgattgagcagctcaatgaggcactctcaaatgccctgggtcatccggcctgg
attgcccttgaagtgggtgaagtgccgggacgcgaaacccccctcgatattcgtggccgt
ttccaccaggaactgcttagaaacgccaagacggcccttggcactgatgcggtggctcag
cggctgatgcaacaagctggcgcctggattgatgaagacagtatcagttatccccaggac
agactggcagcccgtggcagagccctgccacaaccaccggcgctggcagagactcaggat
gaaattgcgtcgtcctga
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