Shewanella khirikhana: STH12_01414
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Entry
STH12_01414 CDS
T06711
Symbol
ihfB
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skh03032
]
STH12_01414 (ihfB)
03036 Chromosome and associated proteins [BR:
skh03036
]
STH12_01414 (ihfB)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_01414 (ihfB)
DNA replication proteins [BR:
skh03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
STH12_01414 (ihfB)
Chromosome and associated proteins [BR:
skh03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
STH12_01414 (ihfB)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
STH12_01414 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
HU-DNA_bdg
Glycos_trans_3N
Phage_lambda_P
THDPS_N_2
Motif
Other DBs
NCBI-ProteinID:
AZQ10535
LinkDB
All DBs
Position
1628796..1629086
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AA seq
96 aa
AA seq
DB search
MTKSELIEKLATRQSQLSAKEVESAVKEMLEQMATTLESGERIEIRGFGSFSLHYRAPRV
GRNPKTGTSVELEGKYVPHFKPGKELRERVDAVNAA
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgactaaatccgaactgatcgaaaaactcgccacaaggcagtcgcaactgtcggcgaaa
gaagtagagagtgcggtcaaggaaatgttggaacagatggccaccacgctggaaagcggt
gagcgtatcgagatccgcggctttggcagtttctcacttcactaccgtgcgccacgtgtt
ggccgcaatccaaagactggtacttcagttgaattggaaggcaagtacgttccgcacttt
aagcccggcaaagagctgcgcgagcgcgttgacgcagtcaacgccgcctga
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