Shewanella khirikhana: STH12_01534
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Entry
STH12_01534 CDS
T06711
Symbol
gmr_4
Name
(GenBank) Cyclic di-GMP phosphodiesterase Gmr
Organism
skh
Shewanella khirikhana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_3
GGDEF
LysR_substrate
Motif
Other DBs
NCBI-ProteinID:
AZQ10643
UniProt:
A0ABM7DAC8
LinkDB
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Position
complement(1748552..1751362)
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AA seq
936 aa
AA seq
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MGTGLKLILRLLLCLSLGLSFLAYSDDKPLTLVMGEDSYPFQFIDENGDPQGLMVELWKE
WSRVNRRPVVFVSRVWRDSLTQLQQGRADVHLGMAINPDRERLFDFADTISEVNTYVYLH
KQLQGRTSLEQLRPFQIGIVQGSTFENELNARVPGLSFKRFPTRESLLEAADRGELVAFA
GMEGYMRDQRLQQKLSVDFPINTRVLVRQTDMHPAVQKGNEALLRQINEGFARLSSDFTR
KLERRWLGYQREQSGLAIAMQLGVEPFVDLGVDGLPHGLYVDLWRLWSEKTGVPINFIPG
DMNGSLEDVRTGRADVHIGYPESDDMNTGLYRAWHMYTVKSRLFLHGNQITDVKALKGKR
IGIFPTAPYVAKVRAALPDTQVRFYNGMEEMLNAVHQGDIVGFVASAAWTQHYLLLNKSW
AEFTQANFLEYDTEIYALIRNGDQGLANRIASGFNMISLKELADIEQKWMLNSRDHVFVK
SREHINLSGPERQYLTGLGSLKMGYLENWAPMEFTDEKGEFAGVNSDVAKMFESMLGIEI
EPVAFKAWGDLISALQSGKIDLAGSVAKTPEREGQITYSEPYWPSAWALVSPIDVVSVFN
LDQLEGQRLAVVEGYQIVSRLMAEYPGIKLVLVPDSQTGLQAVSSGKADLFIEKVVTLAN
KLNSGQFQQLKMSLLADFADQKSHIGVTPRHQELLPYLNKVIAKLDKAKVQEIHSHWMDF
NVDTGVARYQRYLRSVVIALSVLLLLTLVVAVINRRLKQEIKARQRAEARIAHLASHDPL
TGLPNRILLDDRLRQAVLLHGREQAKFALLFVDLDGFKEVNDAKGHAMGDKLLVEVARVL
DDAVRKSDTVARFGGDEFIVLLNKIADMDSVCQVAENLIAKLSKPFDMDGTQISISASIG
IAIYPSDSDNPIGLMQKADKMMYFAKQAGGHSYRSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaccggtttgaagcttattctgcgactgttgttgtgcctgtcactgggtctgtca
tttcttgcctacagcgacgataaacccctgacgctggtgatgggcgaagacagctatccc
tttcaatttatagatgaaaatggcgatcctcagggcctgatggttgagctctggaaagag
tggtcgcgggtaaaccgccgccctgtggtgtttgtcagccgggtgtggcgtgactccctg
acccagcttcagcaagggcgggccgatgtacaccttggcatggccatcaaccccgaccgt
gagcgcctgtttgacttcgccgacaccatttctgaggttaacacctacgtttacctgcac
aaacaattgcagggacgaacctcccttgagcaattgcggcctttccagataggtatagtg
cagggttccacctttgaaaacgaactcaatgccagggtgcccggcctgagcttcaagcgt
ttcccaacccgggagagtctgcttgaggcggcggatagaggggagctggtcgcttttgcc
ggtatggaaggctacatgcgcgatcagcgcctgcagcaaaagctgtcagtggactttcct
atcaacacccgggtgctggtgcgtcaaaccgatatgcatccagcggtgcaaaaaggcaat
gaggcgctgctgcggcaaatcaatgaagggtttgcccggctgtcgagcgactttacccgc
aaactcgagcggcgctggctggggtatcagcgtgagcagagtggtcttgccatcgccatg
cagctgggtgtcgagccttttgtcgacctcggtgtcgatggtttaccccacgggctgtat
gtggatttgtggcgtttgtggtcagaaaaaaccggcgttcccatcaattttatcccaggc
gatatgaatggcagccttgaagatgtgcgcactggccgcgccgatgtgcacattggctac
ccagaaagcgatgatatgaataccgggctgtaccgcgcctggcatatgtacacggtaaaa
agccgactgtttttacatggcaatcaaatcactgacgtcaaggcgctcaaaggaaaacgc
attggtattttcccaacggcgccttatgtggccaaggtgagggcagcgctgcccgacacc
caggtgcgcttctataacggcatggaagagatgctcaatgccgtacatcagggggacatt
gttggctttgtcgcctctgcagcctggacccagcactatctgctgctcaataaaagttgg
gccgaattcacccaggccaactttttagagtacgacaccgaaatctacgccctgatccgc
aatggcgatcaggggcttgccaatcggattgcctccggcttcaacatgataagcctgaag
gagcttgctgacattgagcagaaatggatgctcaacagccgtgaccacgtgtttgtgaag
tcccgcgagcacatcaatctgagcggccccgagcgccaatacctgaccggtcttggcagc
ctgaaaatgggctatttggaaaactgggcgccgatggagtttaccgacgaaaaaggcgag
tttgccggagtgaactccgatgtggctaagatgtttgagtccatgttggggattgagatt
gagcctgtggccttcaaagcgtggggcgaccttatcagtgcacttcaaagcgggaaaatt
gaccttgccggcagcgtggccaaaacgcctgagcgggaagggcaaatcacctacagtgag
ccttactggccatcggcatgggcgctggtaagcccaattgatgtggtgtcggtattcaac
ctcgatcagcttgagggccagcggctggcggtggtggaaggctatcagattgtgagtcgg
ctgatggcagagtaccccggcattaagctggtgctggtgccagacagccagaccggtttg
caggcggtgtcctccggcaaggccgatttgttcattgaaaaagtggtcacccttgccaat
aagctcaacagtggccagtttcagcagctgaaaatgtcactgctggccgattttgccgat
cagaaaagtcatatcggtgttactccgcgccatcaggaattgctgccgtatctgaacaag
gtgatagccaagctcgataaagccaaggtgcaggaaatccactcccactggatggatttt
aatgtggataccggcgttgcccgctatcagcgttacttgcgcagcgtggtgattgcattg
tcggtgctgttgctgctgaccctggtggtcgctgtgattaatcgtcggctgaagcaggaa
atcaaggcccgtcagcgcgccgaggcacgaattgcccatcttgccagccacgacccatta
accgggctgccaaaccggattttgctggatgacagactgcgtcaggcggtgctgctccat
ggccgcgagcaggccaagtttgcgctgctgtttgtggatctcgatggctttaaagaggtc
aacgacgccaaaggccacgccatgggcgataagctgttggtggaagtggcgcgggtattg
gatgacgctgtgcgtaaatccgatacagtggcgcgttttggcggcgatgaatttattgtg
ctgctcaataaaatcgccgatatggacagtgtctgccaggtggcggagaacctgattgcc
aagttgtccaagccctttgatatggatggcacccaaatcagtatctcggccagtatcggc
atcgccatctacccaagcgacagtgacaatcccatcggtttgatgcaaaaagccgacaag
atgatgtacttcgccaagcaggcgggcggccacagctaccgcagtgcctga
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