Shewanella khirikhana: STH12_01622
Help
Entry
STH12_01622 CDS
T06711
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_01622 (rnd)
Enzymes [BR:
skh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
STH12_01622 (rnd)
Transfer RNA biogenesis [BR:
skh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
STH12_01622 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
TFA2_Winged_2
ASA5
Motif
Other DBs
NCBI-ProteinID:
AZQ10730
LinkDB
All DBs
Position
complement(1864842..1865969)
Genome browser
AA seq
375 aa
AA seq
DB search
MLEFQYVKDDETLGALVEQYRQSPVLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLD
IQDLSPFWSLLTEPGILKLVHSCSEDLEVFARYGKVQPSPLFDSQIAAALCGLGHGVGYA
KLVEECLGQTLDKGESRTDWIKRPLTDAQLQYAANDVFFLYQLYPMLEQKLNELGRMDWL
LEEGARLTEGRLERPSAETAFLKVKNAFQLTPKQLAYLKVLAAWRLERALDRDLALGFVI
KDHALIALAKKQPKSLSDLLKINDLSEHEKRIHGKELLKVLQRADLTHLPEPIDVLALKP
GYKQAFKAIKAVLTEVCEREGLPAELFCSKRHIHEYLEYRWQAQADAQLPLLLQGWRGAL
AKDCLAALTDAELAM
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgctggagtttcaatacgtaaaggacgatgaaaccctgggggcacttgttgagcagtat
cgtcaaagcccggtgctggtgctggataccgagtttgtccgcacccggacttactatgcc
agattagggcttattcaggcgtacgatggcaagacactggccttgattgacccgctggat
attcaggatctgtctcccttttggtcactgctgaccgagcctggcattcttaaattggtg
cattcctgctctgaagatttggaagtgtttgcccgctacggcaaggtgcaaccatcgccg
ctgttcgacagccagattgctgcggcgctttgcggtcttggccacggtgtggggtacgcc
aagctggtggaagaatgccttgggcaaaccctggataaaggcgagtcacgtaccgactgg
ataaaacggccgctgaccgatgcccagttgcaatatgccgccaacgacgtgttctttttg
taccagctctatcccatgctggagcaaaagctcaatgagctgggacgcatggattggttg
ctggaagagggcgccagactgaccgaaggtcggcttgagcgtccatcggcggaaacagct
tttcttaaggtgaaaaacgcgtttcagttaacccctaagcagctggcgtatcttaaggtg
ctggcggcctggcgcctggagcgggcgctggacagggatcttgcccttggctttgtgatt
aaagatcacgcccttatcgctttggcaaaaaagcagcctaaatcattaagcgatttgctg
aaaatcaatgacttgtctgagcatgaaaaacgtattcacggcaaagagctgctgaaggtg
ttgcagcgcgccgatctgacccatttgccagagccaatcgatgtgctggcattgaagcca
ggttacaagcaggcgttcaaggccatcaaggcggtgctgaccgaggtgtgtgagcgtgaa
ggcttaccggcggaacttttctgctccaagcgacatattcacgaatacctggagtatcgc
tggcaggcgcaagcggacgcgcagctgccgttgctgctgcaaggctggcgcggcgcgctg
gcaaaggactgtctggccgcgttaaccgacgccgagcttgcgatgtaa
DBGET
integrated database retrieval system
