Shewanella khirikhana: STH12_01623
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Entry
STH12_01623 CDS
T06711
Symbol
fadD_1
Name
(GenBank) Long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
skh
Shewanella khirikhana
Pathway
skh00061
Fatty acid biosynthesis
skh00071
Fatty acid degradation
skh01100
Metabolic pathways
skh01212
Fatty acid metabolism
skh02024
Quorum sensing
skh04146
Peroxisome
Module
skh_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
STH12_01623 (fadD_1)
00071 Fatty acid degradation
STH12_01623 (fadD_1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
STH12_01623 (fadD_1)
09145 Cellular community - prokaryotes
02024 Quorum sensing
STH12_01623 (fadD_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
skh01004
]
STH12_01623 (fadD_1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
skh04147
]
STH12_01623 (fadD_1)
Enzymes [BR:
skh01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
STH12_01623 (fadD_1)
Lipid biosynthesis proteins [BR:
skh01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
STH12_01623 (fadD_1)
Exosome [BR:
skh04147
]
Exosomal proteins
Exosomal proteins of breast milk
STH12_01623 (fadD_1)
Exosomal proteins of breast cancer cells
STH12_01623 (fadD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
AZQ10731
LinkDB
All DBs
Position
complement(1866031..1867707)
Genome browser
AA seq
558 aa
AA seq
DB search
MDKPWINHLPHDVPADIDAGRFDSLVAMFEQAVRDYADQPAFINMGAVLTYRKLEERSRA
FAAYLQNELGLKKGDRVALMMPNLLQYPIALFGVLRAGLVVVNVNPLYTPRELKHQLIDS
GAKTIVVVSNFARTLEEVVDETPVESVIITGLGDLLSAPKRTLVNFVVKYIKKLVPKYDL
PHAISFRKALQKGRRLQYVKPELTNSDLAFLQYTGGTTGVSKGAMLTHGNVTANVLQANG
AYAPLLADGKEFVVTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPAFVADLKKYPF
TALTGVNTLFNALVNNEEFTQLDFSRLKLSIGGGMAVQRAVADKWQSITKTRLLEGYGLT
EASPLVTCCPHNLEGYNGSIGFPAPSTEMQVRDDDGKVLAQGETGELYARGPQVMKGYWQ
RPEETAKVIDANGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEDVIAMHPK
VVEVAAIGVPNEVSGEVVKVFVVAKDKSLTEGDIIKHCKHHLTGYKIPKLVEFRDELPKT
NVGKILRRELRNEELNKA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagccttggattaatcatttgccacatgatgtgcctgccgacatagatgcaggc
cgttttgacagtctggtcgccatgtttgaacaggcggtacgtgactatgctgatcagccc
gcctttatcaatatgggcgccgtgctgacctaccgcaaactcgaagagcgcagccgcgcc
tttgccgcatatttgcaaaacgagctaggcctgaaaaagggcgatcgcgtcgcgctgatg
atgccaaacctgctgcaatatcccattgcgctctttggtgtgctgcgtgccgggcttgtg
gtggttaacgtcaatcccctttacacccctcgggaactcaagcatcaactgattgactca
ggtgccaaaaccatcgttgttgtgtctaactttgcccgcacactggaagaagtggtcgac
gaaacaccggtggaaagtgtgataatcaccggccttggcgacttgctgagtgcgcccaag
cgtactctggtgaactttgtggtgaagtacatcaagaagctggtgcccaaatacgatttg
ccccacgccatttctttcagaaaggcgctgcaaaaaggccgccgtctgcaatatgtcaaa
cccgagctgaccaacagcgacctcgcgtttttgcagtacaccggtggaaccaccggggta
tccaagggtgccatgctgacccacggcaatgtgacagccaacgtgctgcaggccaatggc
gcctatgcgccgctgctggccgatggcaaagagtttgtggtgacggcgctgccgctgtat
cacatctttgccctgacagtgaactgcctgctgttcctgcacaagggcgccaacaacctg
cttatcactaacccccgtgatattccggcgttcgtggccgatttgaaaaaatatcctttt
actgcgctcaccggggtgaacaccctgtttaacgcgctggtgaataacgaagaattcact
cagctcgatttttcgcgccttaagctttccatcggtggcggcatggcggtgcagcgcgcg
gtagctgataagtggcagagcatcaccaaaacccgtctgctggaaggttatggtcttacc
gaagcatcgccgctggtgacttgctgtccgcacaaccttgaaggttacaacggttctatt
ggtttcccagcgccttcgactgagatgcaggtgcgtgacgatgatggcaaggtgttggct
cagggcgagaccggtgaactctatgcccgtggtcctcaggtgatgaaaggctactggcag
cgcccggaagaaaccgccaaggtgatagatgccaatggctggcttgccacaggcgacata
ggttacatggacgagcagggcttcttctacattgtcgaccgtaagaaagacatgatcctg
gtatccggttttaacgtgttccccaatgaggtggaagatgtgattgccatgcatcccaag
gtggtggaagtggctgccatcggcgtgcccaatgaagtcagcggtgaagtggtgaaggtg
tttgtggtcgccaaagacaaatctttgaccgaaggcgatattatcaagcactgtaaacat
catttaacgggctataagatccccaaactggtagaattcagggacgagttacctaaaacc
aacgtgggtaaaatattgcgccgtgagcttcgaaacgaagagctcaacaaggcgtga
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