Shewanella khirikhana: STH12_01886
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Entry
STH12_01886 CDS
T06711
Symbol
truA
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_01886 (truA)
Enzymes [BR:
skh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
STH12_01886 (truA)
Transfer RNA biogenesis [BR:
skh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
STH12_01886 (truA)
Prokaryotic type
STH12_01886 (truA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
AZQ10986
LinkDB
All DBs
Position
complement(2144905..2145690)
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AA seq
261 aa
AA seq
DB search
MRIALGIEYDGSKFYGWQRQAEVNSVQAELERALSIVANEPIEVQCAGRTDAGVHATGQV
VHFDTNAVRKEGAWTLGVNVHLPDDIAVRWAMPVSDDFHARFSATARRYRYVIFNHNFRP
GILRKGVSHYHGDIDVERMHEAAQALLGERDFTSFRAIGCQSNTPFRNVHKVSVSRHGMY
IVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLELKDRNHAAATAKPHGLYLVD
VTYPESFGLPKLALGPLFMPD
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattgctttggggattgagtacgacggcagcaaattttatggttggcaacgccag
gccgaggtgaactcggtgcaggctgagcttgagcgggcattgtccatcgttgccaacgaa
cccatcgaggtgcaatgtgctggacgtaccgacgcaggcgtgcatgccaccggccaggtg
gtgcatttcgataccaatgcggtgcgaaaagaaggcgcctggaccctgggggtgaatgtg
catctgcctgacgatatcgccgtgcgctgggcaatgccggtgagcgatgatttccacgcc
cgtttttctgctaccgcccgccgttatcgctacgtgattttcaatcacaatttccgcccc
ggcattttgcgcaagggcgtcagtcactaccacggcgacatcgatgtcgagcgcatgcat
gaggccgcccaggccttgctgggtgaacgtgactttaccagttttcgcgccataggttgc
cagtccaacaccccgtttcgcaatgtgcacaaggtgagcgtcagccgccatggcatgtat
atagtggtggatattcaggctaatgcgttcctgcatcatatggtgcgcaacattgtgggc
tccctgctggagattggtcttgggaaccagccgctggattggatggctaccctgcttgag
ctcaaagacagaaatcatgcggccgccacggccaaaccccacggtctgtatttggtggat
gtgacctacccggaaagctttggtttgccaaagcttgcgctggggccactattcatgccc
gactaa
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