Shewanella khirikhana: STH12_01904
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Entry
STH12_01904 CDS
T06711
Symbol
fadJ
Name
(GenBank) Fatty acid oxidation complex subunit alpha
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
skh
Shewanella khirikhana
Pathway
skh00071
Fatty acid degradation
skh00280
Valine, leucine and isoleucine degradation
skh00310
Lysine degradation
skh00362
Benzoate degradation
skh00380
Tryptophan metabolism
skh00410
beta-Alanine metabolism
skh00640
Propanoate metabolism
skh00650
Butanoate metabolism
skh00907
Pinene, camphor and geraniol degradation
skh00930
Caprolactam degradation
skh01100
Metabolic pathways
skh01110
Biosynthesis of secondary metabolites
skh01120
Microbial metabolism in diverse environments
skh01200
Carbon metabolism
skh01212
Fatty acid metabolism
Module
skh_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
STH12_01904 (fadJ)
00650 Butanoate metabolism
STH12_01904 (fadJ)
09103 Lipid metabolism
00071 Fatty acid degradation
STH12_01904 (fadJ)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
STH12_01904 (fadJ)
00310 Lysine degradation
STH12_01904 (fadJ)
00380 Tryptophan metabolism
STH12_01904 (fadJ)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
STH12_01904 (fadJ)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
STH12_01904 (fadJ)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
STH12_01904 (fadJ)
00930 Caprolactam degradation
STH12_01904 (fadJ)
Enzymes [BR:
skh01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
STH12_01904 (fadJ)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
STH12_01904 (fadJ)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
STH12_01904 (fadJ)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
DUF4684
Motif
Other DBs
NCBI-ProteinID:
AZQ11004
UniProt:
A0ABN5TUG1
LinkDB
All DBs
Position
complement(2169337..2171460)
Genome browser
AA seq
707 aa
AA seq
DB search
MEKTFNLTRRDDGIALLTMDVPGETMNTLKAQFAPEITAILQEIKADSSIKGLVLISGKA
DSFVAGADISMLDACQTAEDARLLSRQGHHVFAELEGLSIPVVAAIHGACLGGGLELALA
CHQRVCSDSSKTMLGVPEVQLGLLPGGGGTQRLPRLVGIAKALDLMLTGKQVRPKQAIKM
GLVDDVVPESILLETAIKMAGAGKKTRKPQKTSLVTKLLEGTPVGRNIMFDQASKQVMKK
TQGNYPAPFKIIDCVREGMASGMDKGLELEAAHFGTLVATPESAALRSIFFATTEMKKET
GAGEAKPRKVAKAVVLGGGLMGGGIASVTTTKAKVPVRVKDISEKGLSNALGYAYSLLDK
GIKRRHMTPAQRDKLMSLMTTTTEYRGVKDADIVVEAVFEDLNLKHQMVRDIEKECGEHT
IFASNTSSLPITQIAEAASRPENVIGLHYFSPVEKMPLVEVIAHEKTSPETIATTVAFAR
KQGKTPIVVKDCAGFYVNRILALYMNEAAQLLLEGQPVEHLDKALVKFGFPVGPMTLLDE
VGIDVGAKISPILEKELGERFKAPAAFDKLMADDRKGRKNGKGFYLYGKAAKKGKKVDES
VYGVLGLVPGSAKEAGEIAERCVVQMLNEAVRCLEEGIIASPRDGDIGAIFGIGFPPFLG
GPFRYMDTLGAAKMVSLLEGYQAKYGERFAPTELLKSMAADGKRFYG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacctttaacctgacccgccgcgacgacggcattgccctgctgaccatggac
gtgccgggcgaaaccatgaataccttaaaagcgcaatttgcccccgagatcactgctatt
ttgcaggagatcaaagcagatagcagcattaagggcctggtgctgatttccggtaaagcc
gactcctttgtggccggcgccgatatttccatgctggatgcctgccaaaccgcagaagat
gccagattactgtcccgtcagggccaccatgtgtttgccgaactggaaggcctgtctatt
cccgtagttgcagctatccacggtgcttgccttggcggcggccttgagctggcgctggcc
tgtcatcagcgggtttgcagtgacagcagcaaaaccatgctgggtgtacctgaggtacaa
ctgggtctgctaccgggcggcggtggcacccaacgtctgccacgtctggtgggtatcgcc
aaggcgctggatttgatgctgaccggtaagcaggtgcgtcccaagcaggcgattaagatg
ggcctggtggatgatgtggtgcctgaatctattttgctcgaaaccgccattaaaatggcc
ggggcgggtaaaaagacccgtaagccgcaaaagacctcactggtaaccaagctgctggaa
ggcacccctgtgggccgtaacatcatgttcgatcaggccagcaagcaggtaatgaagaag
acccagggtaactatcctgcgccattcaagattatcgattgtgtccgtgaaggcatggcc
agcggcatggacaaggggctggagctggaagcagcgcactttggtacgctggtggcaacc
cccgagtctgccgcgctgcgctctatcttctttgcgacgaccgaaatgaaaaaagaaacc
ggtgccggtgaggccaagccgcgcaaggtggccaaagccgtggtgctgggtggcggcctg
atgggcggcggaattgcctctgtgaccaccaccaaggccaaggtgccggtgcgggtgaaa
gacatcagcgagaaggggctgtccaatgcgcttggctatgcttattcgctgctggacaag
ggcattaagcgccgccatatgacaccggctcagcgtgacaagctgatgtcgttgatgacc
acaaccaccgaatatcgcggcgtaaaagatgccgatatcgtggttgaggcggtgtttgaa
gacttgaacctcaagcatcagatggtgcgcgatatcgagaaagagtgtggcgagcacact
atttttgcgtcaaacacctcgtcgttgcctattacccaaattgccgaggctgcgagccgg
ccggaaaatgtgattggtctgcattacttctctccggtggaaaaaatgccgctggtcgaa
gtgattgcgcacgagaaaacctcacccgagaccattgccaccacagtcgcctttgcccgc
aagcagggtaaaacgccgattgtggtaaaagactgtgccggtttttatgtgaaccgtatt
ctggcgctgtacatgaacgaagcggcgcagttgctgctggaaggtcagccggttgagcat
ctggataaggcgctggtgaagtttggcttcccggtgggcccaatgacattgctcgatgaa
gtgggcattgatgtgggcgccaagatttcaccgattcttgagaaggagcttggtgagcgc
tttaaggctcccgcagctttcgacaagctgatggccgacgatcgtaagggccgcaagaac
ggcaagggtttctacctctacggcaaagcggccaagaaaggcaagaaggtggatgagagc
gtctacggggtgctgggtttggtgcccggcagcgccaaagaagccggcgagattgccgag
cgctgcgtagtacagatgctcaatgaagcagtgcgctgcctggaggagggcattattgcg
tcgccccgtgacggtgatattggcgccatcttcggtattggcttccctccgttcctgggc
ggtcctttccgttacatggataccttgggtgccgccaaaatggtgagcctgcttgaaggc
tatcaggcgaagtatggcgagcgtttcgcgcccactgaattgcttaaatccatggcggct
gacggtaaacgtttttacgggtaa
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