Shewanella khirikhana: STH12_02046
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Entry
STH12_02046 CDS
T06711
Symbol
fliA
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
skh
Shewanella khirikhana
Pathway
skh02020
Two-component system
skh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
STH12_02046 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
STH12_02046 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skh03021
]
STH12_02046 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
skh02035
]
STH12_02046 (fliA)
Transcription machinery [BR:
skh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
STH12_02046 (fliA)
Bacterial motility proteins [BR:
skh02035
]
Flagellar system
Flagellar assembly proteins
Stator
STH12_02046 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
UPF0122
CT_C_D
TY-Chap3
IMP_cyclohyd
Motif
Other DBs
NCBI-ProteinID:
AZQ11134
UniProt:
A0ABM7DB16
LinkDB
All DBs
Position
complement(2321522..2322241)
Genome browser
AA seq
239 aa
AA seq
DB search
MNKAAAYTSMEDKTSIVEQYAPLVKRIAHHMLARLPASVQLDDLLQAGMIGLLEASTKFD
GGKGAKFETFAGIRIRGAMLDEIRKGDWVPRSVHRNQRRVAQVIDELEQELGRDARDSEI
AERLDMSLDEYHHILNDVSVGKIIGIEDLGVSQDVLVPDGEQTDDIYDDLAGSQFQQALA
DAIRQLPERDALVLSLYYDEALNLKEIGAILDVSESRVCQIHSQAMLRLKGKLKHWTHV
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcggcgtatacctccatggaggataaaacctccatcgttgaacagtac
gcaccgctggtaaaaagaatcgcgcaccatatgttggccagattgccggcatccgtacag
ttggacgacttgctccaggcaggcatgattggcctgctggaggcctcgaccaagtttgat
ggtggcaaaggcgccaaatttgaaaccttcgccgggatccgcattcgcggcgccatgttg
gatgaaatccgcaagggcgactgggtgccacggtcagtacaccgtaaccagcgaagagta
gcccaggtcattgatgagttagagcaggagctggggcgggatgcccgcgacagtgaaatt
gccgaaagacttgatatgtcgctggatgaataccatcatattctcaatgatgtttctgta
gggaaaatcatagggatagaagatttgggcgtatctcaggatgtgctggttcccgatggg
gagcaaacagacgacatctatgacgacctggcgggtagccagtttcaacaggccttggca
gatgccattcgccagttgccggagagagacgcattggtgttatcgctttattacgatgaa
gcactgaacttaaaagaaataggtgccattcttgacgtcagcgagtcgcgggtatgccag
atccacagtcaggcgatgctcagactcaagggcaagctcaagcattggacacacgtataa
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