Shewanella khirikhana: STH12_02198
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Entry
STH12_02198 CDS
T06711
Symbol
ygdH
Name
(GenBank) LOG family protein YgdH
KO
K06966
pyrimidine/purine-5'-nucleotide nucleosidase [EC:
3.2.2.10
3.2.2.-]
Organism
skh
Shewanella khirikhana
Pathway
skh00230
Purine metabolism
skh00240
Pyrimidine metabolism
skh01100
Metabolic pathways
skh01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
STH12_02198 (ygdH)
00240 Pyrimidine metabolism
STH12_02198 (ygdH)
Enzymes [BR:
skh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.10 pyrimidine-5'-nucleotide nucleosidase
STH12_02198 (ygdH)
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Gene cluster
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Motif
Pfam:
PpnN_C
DUF4478
Lysine_decarbox
LDcluster4
Motif
Other DBs
NCBI-ProteinID:
AZQ11284
UniProt:
A0ABM7DNW8
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All DBs
Position
2519131..2520486
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AA seq
451 aa
AA seq
DB search
MIVKVSPRGSMDQLSQLEVDRLKQSAKSPLYQLYRNCSLAVLASGLKSDSSTELFDAYKD
FEINILQRERGVKLELVNPPEQAFVDGQIIAGIQEHLFSVLRDILYIADKYDNLKHINLT
NASHITNMVFDILRNARALPTKNDPNVVVCWGGHSINAIEYQYTREVGYQLGLRKLDICT
GCGPGAMEGPMKGAAIGHAKQRICNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKANKDIPFPLVLTGPKESADYFIKIDEFI
GATLGEEARSKYRIIVDNPEEVARVMKESMEEVKVFRKSNGDAYPYQWSLKIEPEFQLPF
VPTHEVMANLNLYFQNNKAELAANLRRAFSGIVAGNVKGETIRLIKRHGPFEIKGDPKLM
DLMDELLQAFVVQQRMKLPGSAYEPCYKIVK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgaaagtgagcccccgtggcagcatggaccaactgtcccaactggaagttgat
cgcctcaagcaaagcgccaaaagtcccctctatcaactctaccgcaactgctccctggcc
gtgttggcctcggggctgaaaagcgacagctcaaccgagttgtttgatgcctataaagat
ttcgaaatcaatatcctgcaacgtgaacgcggggtaaaactcgaactggtcaatcccccc
gagcaagcctttgtggatggccaaataatcgccggtattcaggagcacctgttttcggtg
ctaagagacatcctctatatcgccgacaagtacgataacctcaaacacattaacctcacc
aacgccagccacatcaccaatatggtgtttgatatcctgcggaacgcccgtgccctgccc
accaaaaacgaccccaatgtggtggtctgttggggtggtcacagcatcaatgccatcgag
tatcagtacacccgtgaagtgggctatcagctggggctgaggaaactggatatctgcacc
ggctgcggccccggcgccatggaagggcccatgaaaggtgccgctatcggccatgccaaa
cagcggatttgtaacgcccgctacatcggcctgacagagcccagcatcattgccgccgag
ccgcccaatcagattgtgaacgaactggtgatcctgccggatattgagaaacgcctggaa
gccttcgtgcgcctggggcacggcattgtgattttccccggcggcgccggtacggccgaa
gaactgctctacctgctcggcatcttgctcaataaagccaataaagacatccccttcccg
ctggtactgaccggcccgaaagagagcgccgactacttcattaaaatcgatgagtttatt
ggcgccaccctcggtgaagaggcccgcagcaagtaccgcatcatagtggataaccccgaa
gaagtggcccgggtcatgaaggaaagcatggaagaggtgaaggtgttccgtaaatccaac
ggcgatgcctacccctaccagtggtcgctgaaaatcgagcctgaattccagctgcccttt
gtccccacccacgaggtgatggcaaacctgaacctttacttccagaacaacaaggccgag
cttgccgccaatctgcgacgggcgttttccggcattgtggcaggtaacgtaaaaggcgaa
actattcgcctgattaagcgccatggcccatttgagattaagggcgatcccaagctgatg
gacctgatggacgagctgctgcaggcctttgtggtgcaacagcggatgaagctccccggc
agcgcctatgagccttgctacaagatagtgaaatga
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