Shewanella khirikhana: STH12_02228
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Entry
STH12_02228 CDS
T06711
Symbol
gmr_8
Name
(GenBank) Cyclic di-GMP phosphodiesterase Gmr
Organism
skh
Shewanella khirikhana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_3
PAS_9
PAS
5TM-5TMR_LYT
PAS_8
PAS_4
PAS_11
PAS_7
Motif
Other DBs
NCBI-ProteinID:
AZQ11314
LinkDB
All DBs
Position
complement(2553153..2556212)
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AA seq
1019 aa
AA seq
DB search
MDQGILFPLVENAALLLALVFIYDAIPWLKQQRLLGLWRVLLGVVIGGIGMTIMSTPYEF
AEGIYFDTRAVLLSVSGLYFGGVPTIIAAAMTAAFRVSIGGQAMFAGIAGIVFSAGLGLL
WRLRWKDNLAHIPLLQLLVLGVLVHLCVLGSMFIMPLGVAWDLLSAISLPVLLVCPLATM
LLARLLARRIEIERDEKIKLQDDFLFRSQFNVGNIGIAITSVDKRWIKVNPRLCQMLKYT
EKELLGLSWEQMSHEDDLAKDLEQFHRMLAGSIDQYEINKRFYAKDGSVVHTHMTVACKR
SGGKVQLVIAGFMDISDQTLSEMRVRASREQLALVLASGDLGFWDWDLKSDIVVRNERCA
QMLGVSMAEMIDNNRIWVDAVHPDDRLKLLRSLDLHLNGHSQNHNLEYRIRRKDGQVIWV
RDTGRVMHRDVDGKALRMCGIHVDITDARRSQEQLELAASVYNNSSEAMSVMDDKGNIIT
INAAFTDITGYSEDEVLGRHISLLNYPRNPEHFYDQLNREVQTSGRWQGEMWQKHKNGEE
YLIWLTVNTIYDSYNRPYRRVALFSDITEKKAQEQLIWQQANYDPLTGLPNRRMLLDYLD
KEIALSERQHSHFALLFLDLDFFKEVNDTLGHDMGDKLLVECAERIRGCVRESDVVARLG
GDEFTVIIRDIHDPQGVERVASKILKAVAEPYLLGQDTAYISVSIGITLFPDDANSREAL
LKHADQAMYAAKEQGRNRFNYFTPSMQEYARYRMRLIQDLRLAVEQQQFTLYFQPIVQMS
SGAVHKAEALLRWQHEERGFVSPAEFIPVAEDTGLILEIGTWVFENAARQSRDWQRKFGQ
PIQLSVNKSPVQFRDEGENFERWVELLKELELTQGGICIEITEGLLLDASSGVSEKLLAY
RDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNLEEDSSDRTLCEAIIVMAHKL
GMKVIAEGVETAAQRDILLAMGCDYGQGYLYSKPVTAQEFEARYLAAPVKEATAPSLQQ
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggatcagggtattctgttcccgctggtggaaaacgccgcgctattgctggcgctggtg
tttatctacgatgccataccatggctgaagcagcaaagactgcttgggctgtggcgagtg
ctgcttggtgtggtcatcggcggtattggcatgaccattatgtcgaccccctatgagttc
gccgaaggcatttatttcgatacccgcgcggtgctgctcagtgtcagtggcctgtatttt
ggcggcgtaccaaccattattgccgccgccatgaccgctgcatttcgggtcagcattggc
ggtcaggcaatgtttgccggcattgccggtattgttttcagcgcaggtctaggtctgttg
tggcgcctgcgctggaaagacaacctcgctcatatccccctgttacaactgctggtgctg
ggtgtgctggtgcatctgtgtgtgcttggcagcatgtttatcatgcccctcggtgtggcc
tgggatctgctgtcggccatctcactgcctgtgctgctggtttgcccgctggcgaccatg
ctgctggccagattgctggcgcggcgcatcgaaatcgagcgcgatgagaaaatcaaatta
caggatgacttcctgtttcgttcccagttcaacgtcggcaatatcggcattgccatcacc
tcggtggacaagcgctggattaaggtgaatccacgcctgtgccagatgctgaaatacacc
gaaaaagagctgcttggcctcagttgggagcaaatgtcccacgaggatgatttggccaag
gacttggagcagttccaccgtatgctggcgggcagtatcgaccagtacgaaatcaataaa
cgtttctacgccaaagacggcagcgtggtgcacacccatatgacggtggcctgcaagcgc
agcggcggcaaggtgcaattggtgatagccggctttatggatatcagcgatcagaccctg
tcggaaatgcgggtgcgggccagtcgcgagcagcttgcgttggtgctggcctccggcgat
ttgggcttttgggactgggatcttaagtccgacatagtggtgcgcaacgagcgctgcgcc
cagatgcttggcgtatccatggctgaaatgatagataacaaccgcatttgggtcgatgcg
gtgcacccggatgaccgccttaaactgctgcgctcactcgatttacaccttaacggccac
agccagaaccataacctcgaataccgtattcgccgcaaagacggacaggtgatctgggtg
cgggacacaggccgggtgatgcacagagatgtcgacggcaaggcgctgaggatgtgcggt
atccacgtggatatcacagatgcccgtcgcagccaggagcaattggagctggcggcatct
gtgtacaacaactccagtgaagccatgagcgtgatggatgataagggcaatatcatcacc
atcaacgccgcttttaccgacatcaccggctacagcgaagatgaggtactggggcgccat
atcagcctgcttaattatccccgtaaccctgagcacttttacgatcagcttaaccgcgaa
gtgcaaacctctggccgctggcagggggagatgtggcaaaagcacaaaaatggcgaggaa
tacctgatttggctgaccgtgaataccatttacgacagctacaatcgcccttatcgccgg
gtggcgctgttctcggatatcaccgagaaaaaggcgcaggagcagctgatttggcaacag
gccaactatgaccctctcaccggcctgccaaaccggcgcatgttgctggattatctggat
aaagaaattgccctgtcggagcggcagcacagtcactttgcgttgctgttcctcgatttg
gatttctttaaagaggtgaacgacaccctgggccacgatatgggtgacaaactgctggtg
gagtgcgccgagcggatccgcggctgtgtacgcgagtcggatgtggtggcgcgcctcggc
ggcgatgagttcactgtgataatccgcgatatccacgacccacagggtgtggagcgggtg
gccagcaaaatcttaaaagcggtggccgagccttatctgcttgggcaggacaccgcttac
atcagcgtcagtatcggtattaccctgtttccggacgatgccaacagccgtgaggcgctg
ctcaaacacgccgatcaggccatgtacgcggccaaggagcaaggccgcaaccgcttcaat
tacttcacgccttccatgcaggaatacgcccgttatcggatgcggcttattcaggatctg
cgtctggcggttgagcagcagcaatttaccctgtatttccagccgatagtgcagatgtcc
agcggggcggtgcacaaggcagaggccttgctgcgctggcaacatgaggagcgcggcttt
gtgtcgccggcggaatttattcctgtggccgaagataccgggcttatcctggaaatcggc
acctgggtgtttgaaaatgccgcccgtcagagccgggactggcagcgcaagtttggtcaa
cccattcagctcagcgtcaacaaatcgccggtgcagtttcgcgatgaaggggaaaacttc
gagcgctgggtggaactgctcaaagagctggaacttacccagggcggcatttgcatcgaa
atcaccgaagggctgctgctggatgcctcatccggggtatcggaaaaactgctggcttac
cgcgatgcgggcattcaggtgtccctggatgactttggtaccggatactcgtctctggcg
tatcttaaaaagttcgatatcgattatcttaaaatcgatcagtcctttacccgcaatctg
gaggaggactccagcgaccgcaccctgtgtgaagccattatcgtgatggcccataagctg
ggcatgaaggtgattgccgaaggggtggaaaccgccgcccagcgcgacattctgctggcc
atgggatgcgattacggccagggctacctgtattccaaacccgtaacggcacaggagttt
gaagcgcgctatctggcagcgcctgtgaaggaagccactgcacccagcctgcaacagtaa
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integrated database retrieval system
