Shewanella khirikhana: STH12_02285
Help
Entry
STH12_02285 CDS
T06711
Name
(GenBank) Deoxyribodipyrimidine photo-lyase-related protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_02285
Enzymes [BR:
skh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
STH12_02285
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
STH12_02285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
AZQ11371
LinkDB
All DBs
Position
complement(2615161..2616870)
Genome browser
AA seq
569 aa
AA seq
DB search
MLPQSPKGDFKFHTLRLLLGDQLGSHHSWFSQRDDGVLYLIAELKQENSYVTHHIQKVCA
FFAAMVDFATSLKAAGHRVLHLTLDDSAEFVDLPALLSHVLQITAAGRFEYQRPDEYRLL
LQLGSFEPPGVQVEMVESEHFLLPFDEINALFPKGKHILMESFYRRMRKRFNILMDGAKP
VGGQWNFDASNRNKLKAPDIANLPQPLQFTNDISEIVARLQRHGIVTIGSLKPGARQSFA
MESESYASGDLFATFAEPEPELESEHASRATPHTLLWPINRQQSLALLAHFCRYSLPQFG
RFQDAMTANHPSAWSLYHSRLSFSINSKMLHPAEVIDAAISAFEACGNDGASGAIDMAQV
EGFVRQILGWREYVRGVYWANMPDYANLNALGAQKRLPHYFWSGDTRMNCMRRAIGQSLD
YAYAHHIQRLMITGNFCLLTDIDPTQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVG
TKPYAASGAYINKMSDYCQDCHYNIKAKSGAGSCPFNSLYWRFMDKHKERLGANHRLGMI
FASWYKMTESQRSAILATAEQYIADLERL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgttaccccaaagccccaagggcgattttaagttccatacgcttcgattactccttggc
gatcagctggggagtcaccactcctggttcagtcagcgcgatgatggcgtgctctatctt
attgctgagcttaagcaggaaaacagctacgttacccatcatatccagaaggtgtgcgcc
tttttcgcggccatggtggactttgccacaagccttaaggcagcgggtcatagggtgctg
cacctcaccctggacgacagcgccgaatttgtcgacctgccagcgcttttaagccatgtg
ctgcaaataacagctgccggtcgctttgaatatcagcgccccgatgagtatcggctgctg
ttgcagcttggcagctttgagccgcctggggtgcaagtcgagatggtggaaagcgagcac
tttttactgccgtttgatgagataaatgcgctctttcccaaaggtaaacacatactgatg
gaaagcttttatcggcggatgcgaaagcgctttaacattctgatggatggtgccaagccc
gtcggtggtcagtggaatttcgatgccagcaaccgcaataaattaaaagcgcccgacatt
gcaaacttgccgcagcctttgcagtttacaaacgatatcagcgagatagtcgcgcgcctg
cagcgccatggcattgttaccatcggcagtcttaagcccggagcaaggcaaagcttcgca
atggaaagtgagtcatacgccagtggcgacctcttcgccacattcgctgagccagaacca
gaacttgagtctgaacatgcctcccgggccacaccacacacactgctgtggcccatcaat
cgccagcaaagtctggccctgctggctcatttttgccgttactccctgccgcagtttggc
cgttttcaggacgcgatgacggcaaaccatccgtccgcctggagcctttaccacagccgc
ttatccttttcgataaacagcaaaatgctgcatccggccgaggtgatagatgccgccatc
agcgcctttgaggcctgcggcaatgatggagcaagcggcgcaatcgatatggcgcaggta
gaaggatttgtacggcaaattcttggctggcgggaatacgtgcgcggtgtctattgggcc
aatatgccggattacgccaatcttaacgcccttggcgctcaaaagcggctgccgcactat
ttctggagtggcgatacccgcatgaactgtatgcgccgcgccatagggcaatcactggat
tatgcctatgcccatcatattcaacggcttatgatcaccggcaatttttgcctgctcacc
gacatcgaccctacgcaggtggacgattggtatctgggcatctatgtggatgccattgaa
tgggtcgagatgcccaacacccgaggcatggcgctgtttgccgatggcggcattgtgggc
accaaaccctatgccgccagtggcgcctatatcaacaagatgagtgattactgccaggac
tgccattacaacatcaaggccaaaagcggcgcgggctcatgcccctttaacagcctgtat
tggcgctttatggataaacataaagagcgccttggcgccaaccatcggctggggatgatt
ttcgccagctggtacaaaatgactgagtcgcagcgcagcgcgattctggccacggccgaa
cagtatattgccgacctggagcgactgtga
DBGET
integrated database retrieval system
