Shewanella khirikhana: STH12_02387
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Entry
STH12_02387 CDS
T06711
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03030
DNA replication
skh03430
Mismatch repair
skh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STH12_02387 (holA)
03430 Mismatch repair
STH12_02387 (holA)
03440 Homologous recombination
STH12_02387 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skh03032
]
STH12_02387 (holA)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_02387 (holA)
Enzymes [BR:
skh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
STH12_02387 (holA)
DNA replication proteins [BR:
skh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
STH12_02387 (holA)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
STH12_02387 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
KaiA_N
Motif
Other DBs
NCBI-ProteinID:
AZQ11466
LinkDB
All DBs
Position
2721897..2722925
Genome browser
AA seq
342 aa
AA seq
DB search
MRVYPEQLGRHLSPLAQCYCLFGDEAWLIESARSQLLDAGRAQGFEERISLEQENSFNWQ
ELENEWLAMSLFASRRIIELTLPQAKPGTDGSAMLASLMAQPNPDLLLIVRGPKLASEQT
NSKWFKALDKAGIYLPCNTPEGPQFSRWLDGRIQAHRLQLQPDAKALLASLYEGNLLAAE
QALQLLALLTQGRMVGAAELGQYFEDQSRFNVFQLADALLANQQDRAAHMLAQLRAEGTA
MPIVLWAVFRELTTLLTLKSAMDGRESLAPLWSKLRIWDKRKPLYEGALRRLSLNQIEAM
LALSSQLELKLKQAGEEDWTLLMHLCLLFDPNAHQRLIAVHD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgtatcctgagcagcttggccgccacctgtcgcccctggcccagtgctattgc
ctgtttggagatgaagcctggctgatagaaagcgcccgcagccagttgctggacgcaggc
cgggcgcagggatttgaggaacggataagcctggagcaggaaaacagctttaactggcag
gaactcgaaaatgagtggcttgccatgagcctgtttgccagccgccgcattatcgaactc
accctgccccaggccaagccaggcactgacggcagcgccatgctggcaagcctgatggcc
cagcccaatcctgatctgctgctgatagtccgcggccctaaacttgccagcgagcaaacc
aacagcaagtggttcaaagccctcgataaagcgggtatctacctgccctgcaataccccc
gaagggccacaattcagccgctggctcgatggccgtatccaggcacataggctgcaattg
caacccgacgccaaggcgctgctcgcaagcctgtacgaaggcaacctgctggcggccgaa
caggcgctgcaactgctggcactgctcacccagggccgtatggtgggggcagccgagctt
gggcaatattttgaagatcagtcgcgctttaacgtgtttcagcttgccgatgccctgctc
gccaaccagcaagacagagccgcccatatgcttgctcagctgcgcgctgaaggcactgcc
atgccgatagtgctgtgggcggtattcagggagctgacaaccctactgacactgaaatcg
gccatggacgggcgcgagtcgctggcgccgctgtggtcgaagctgcggatttgggacaaa
cgcaaacccttgtatgagggggcactcagacgcctgagcctcaatcaaatcgaggccatg
ctggcgctctcgtcccagcttgaacttaagctcaagcaagcaggcgaagaagactggact
ttgctgatgcacctgtgtctgctgtttgaccccaacgcccatcaacgcctgattgccgtc
catgactga
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