Shewanella khirikhana: STH12_02579
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Entry
STH12_02579 CDS
T06711
Symbol
rhlE_4
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_02579 (rhlE_4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_02579 (rhlE_4)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STH12_02579 (rhlE_4)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STH12_02579 (rhlE_4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZQ11648
LinkDB
All DBs
Position
2940924..2942609
Genome browser
AA seq
561 aa
AA seq
DB search
MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLKGRDLLAAAQTGTGKTAGFTLPLL
ELLSQTQKAGPKQVRALILTPTRELAAQIGENIHAYSKFLPLKSTVVFGGVGISPQITTL
RRGVDILVATPGRLLDLHQQGVVSFSGLDILVLDEADRMLDMGFIHDIRRILKLLPAKRQ
NLLFSATFSEEIRTLAHGLLHNPAEVSVTPKNSAAETVKQWIVPVDKTKKPALLAELTRF
YRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIAT
DIAARGIDINELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVSSEEAKQLRDIER
LIKQSLPRKEFVGFEPVHGLPASENQGKSKPGNKQGGKPGNNSQGRKPQGQGRNAQPKQR
QGSRAQEERNQQDRSQSRSEQQRRERGGNDQARTDKPRSDKPRSDKPRSDKPRTDKPRSD
RSRAEHGSSDKARSDSFRNGSPRNDSSRSDSNRQSGARNDRSNTDRAANSKPRSGNRAQG
QHSQGQQRPRSNAKVGDRNQG
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctctctgggactgtcggctcccatcctcaaagccctcgatcataagggc
tataaaaccccctctcccattcaggcgcaggcaattcctgtggtactgaaaggacgggat
ctgcttgccgcagcccaaacaggcaccggcaagactgccggctttaccctgcccttgctg
gaattactgtctcaaacccaaaaggccggccccaagcaggttcgagcgcttattctgacg
ccaacccgcgaactggctgcgcaaatcggtgaaaacatccacgcttacagcaagttcttg
ccactcaagagcacagtagtattcggtggcgtgggcattagcccgcagatcaccaccctg
cgccgcggtgtagacattctggtggccacccccggacgcttgctcgacttgcaccagcaa
ggtgtggtgagcttttccggactggatattctggttctggatgaagccgaccgcatgctg
gacatgggctttattcacgacattcgccgcatcctcaagctgctaccggccaaacgtcag
aacctgctgttctccgccaccttttcggaagaaatccgcaccctggcccacggactgctg
cacaacccagccgaggtgtctgttacgccgaaaaacagcgccgccgaaaccgtcaagcag
tggattgtgccggtggacaaaaccaagaagcccgcactgctggccgagctgacccgcttc
tatcgctggcagcaggtactggtattttgccgcaccaaacacggcgccaaccgtctggta
cgccagatggacgcagaaggcattaaggccgctgccattcacggcaacaagagccagaac
gcccgtacccaggcgctggccgactttaagcgcggcgccattcggatgctgattgccacc
gacatcgccgcccgtggtatcgacattaacgaactgcccaacgtggtgaacttcgaactg
ccccacgtgccggaagactatgtgcaccgcatcggccgtaccggccgcgccggtgccagc
ggtgaagccgcgtcactggtatccagtgaagaagccaagcaattaagggatatcgaacga
ctgatcaagcagtcgctgccacgcaaagaatttgtgggttttgagccggttcacggcctg
cccgccagcgaaaatcagggcaagtccaagccaggcaataagcagggtggcaagcccggc
aataacagccagggccgcaaacctcagggccagggccgcaatgctcagcccaagcagcgt
cagggcagccgagcgcaggaagagcgcaaccagcaggacagaagccaatcccgcagcgaa
cagcaacgccgcgaaagaggcggtaacgaccaggctcgcactgacaagccgagaagtgat
aagccgcgaagtgacaagccgagaagtgacaagccgcgcacagacaagccccgcagcgat
cgctcccgtgctgagcatggcagcagcgacaaagctcgtagcgacagtttccgtaacggt
agtccccgcaatgacagttcccgtagcgacagcaaccgtcaaagcggcgctcgcaatgac
cgctcgaatacagacagagcggcaaacagcaaaccccgcagcggcaatcgagctcaaggc
cagcactcacaaggccagcagcgcccgcgcagcaatgccaaagttggcgatcgcaatcag
ggctga
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