Shewanella khirikhana: STH12_02615
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Entry
STH12_02615 CDS
T06711
Symbol
srmB_2
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
skh03009
]
STH12_02615 (srmB_2)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STH12_02615 (srmB_2)
Ribosome biogenesis [BR:
skh03009
]
Prokaryotic type
rRNA helicases
STH12_02615 (srmB_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF7115
AAA_19
DUF2460
Motif
Other DBs
NCBI-ProteinID:
AZQ11684
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All DBs
Position
2981599..2982822
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AA seq
407 aa
AA seq
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MQFEDFQLDPALLESLKAMGHTSPTTIQRMTVPLAMEARDILARAPTGTGKTASFLLPAL
QHLIDFPRRRPGQARVLILTPTRELASQVHRYACHLATDLELDIKIITGGVPYQPQEAML
KQNVDILVATPGRLLEYLDKGLFSAELVETLVIDEADRMLDMGFGDVVKTLAVEAQGRKQ
ALLFSATLEGGGVGAFARELLNDPVFVESEPPRSEKAKIHQWIHLADDKNHKFALLCHLL
KQEDVTRAIVFCKTREVVASLDGMLQQEGIACAFMRGDMDQKKRFQALGRFTKGEVNVLL
ATDVAARGIDIDDISHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKI
ERYTEQSLKRRVIEGLRPKHKEAKVPGKKKVKAKDGKAKKPKKSAKK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccaattagaccccgccctgctggagtcgctgaaagccatgggg
catacgtcccccaccaccattcaacgcatgacagtccctcttgcgatggaagccagggac
attctggcgcgtgcccctaccggcacaggtaaaaccgccagcttcctgctgcctgcgctg
cagcacctgattgatttccctcgccgccgtcccggtcaggcgcgggtgcttatccttacc
cccacccgggaactggcaagccaggtgcatcgctacgcctgccatctggccaccgacctc
gagctggatatcaagatcatcaccggcggtgtgccttaccagccccaggaagccatgctg
aaacaaaacgtggacattctggttgccaccccaggccgcttgctcgagtacctcgacaag
ggactgttcagcgccgagctggttgaaaccctggtgattgatgaagccgaccgcatgctg
gacatgggctttggcgatgtggtgaaaaccctggctgttgaagctcagggccgcaagcaa
gccctgctgttctctgccaccctcgaaggcggcggtgtaggtgcttttgcccgcgaactg
ctgaacgatcctgtgtttgtggaatccgagccaccacgcagcgaaaaggccaaaatccac
cagtggatccaccttgccgatgacaagaaccacaagttcgcgctgctatgtcacctgctc
aagcaggaagacgtgacccgcgccattgtgttctgtaagacccgcgaagtggttgccagc
ctcgatggcatgttgcaacaggaaggcattgcctgcgcctttatgcgcggtgacatggat
cagaagaaacgcttccaggcactgggccgctttaccaagggtgaagtgaacgtgctgctg
gccaccgatgtggccgcccgtggtatcgatatcgacgatatcagccatgtgattaacttc
gacatgccacgctcggccgatacctatgtgcaccgtattggccgtaccggtcgtgccggt
gccaagggcacggccatctcgctggttgaagcccacgatatgcgtattctggggaagatt
gagcgctacaccgagcagtcgctcaagcgtcgggtaatcgaaggcctgcgccccaagcac
aaagaagccaaggtaccgggcaagaagaaggtcaaagccaaagacggcaaggccaagaag
cccaaaaaatccgctaaaaaataa
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