Shewanella khirikhana: STH12_02954
Help
Entry
STH12_02954 CDS
T06711
Symbol
mscM_1
Name
(GenBank) Miniconductance mechanosensitive channel MscM precursor
KO
K22051
miniconductance mechanosensitive channel
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
skh02000
]
STH12_02954 (mscM_1)
Transporters [BR:
skh02000
]
Other transporters
Pores ion channels [TC:
1
]
STH12_02954 (mscM_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
MscS_porin
DUF5847
Motif
Other DBs
NCBI-ProteinID:
AZQ12018
LinkDB
All DBs
Position
3348941..3352165
Genome browser
AA seq
1074 aa
AA seq
DB search
MPKPGAMLRILLIALVFSSFLCQANSPLQLDKRLGFTPTETQTQATPAQQTQDLLSSIET
LSQMAGEYQDQLLSFDTEKATLNKALASAQKELQLARRQDLNQQASAAYLRLSELKETES
QLSQQQSSLLQRHNQLPGAVSSARQALMQHQKAPLSAPDTAMGLLQQTQRQYYEQNLATL
EAEQTSSQKRIELVQLRLKVVRAQLAQQELFIEKLNRAISNERQAITDATLADSLAPATS
TDDALTRRLKANNELLGQKLQTLTLQIDNVVDQQEAAEKRYQEQSLQISNIQEQIAWVKT
NSAFGERFLQMLQNLPKPPNQEALQNQIADTRLARYQMEQDLARNQEQLDEKAQFSDAQY
QLLQAESKLLKQLLQGFDQLLSELAKLKVSQNNLTAQYHTLKNTLSEHLFWVPNAAPIGK
LWVTDLHRSLIWLVQQAPWQQLSQALDEQSDYWSWWLILLVLCLVVQDIVKPRFDRALSR
FIAPVGNVTQDDFIYTFETLLVTMGYALLRPSPVILAGAFFMLSQYNLVQAVGCGLLVMG
CVYLVYRFMFLLSVEKGVLIGHFRRPKEVIEHGKQRLKSLMLITIPLVAIVSFTEILELS
LVRNSLGRGAFIILCLQLFWFYRDILNFARKYRAEQQDPGKNRRLLQRLLWMVLLLTPVI
SAVLAWRGFYFTAFQLLLQLQLSLLLALGFLLLYQLIKRWMLIERRRIAFDRAKAKRAEK
LAQRERGETVLADSQDVYEEPKVDLETISSQSLGLVRSLLILAFLASLIGLWTQTHSAMF
SFLDGINLWNSTALIDGSEQLVPVTLKSVLFGILIMVFSLMIATNLPGLLELVLLQRLDL
TPGTGFAITTVSRYLVVMVGTLVGFSTLGMEWSKLQWLIAALSVGLGFGLQEIFANFISG
LIILFEKPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIVPNKAFITEQLINWSLS
DPITRVIIKVAVARDSDPAKVEASLYQAIKECQHALHTPEPEVWFAGFGQHTQDYEVRAY
AKDMGARWPLRHDLHKRISAKLKENNLELAFPQMEITINQTTNVPGRDSQLQLR
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
ttgcccaagcccggtgccatgttacgtattctgctgatagcgcttgttttttcttctttt
ctttgccaggccaactctccccttcagttggataaacgtcttgggtttacgccaactgaa
actcagactcaagccactccggcacagcaaacccaggatctgctgagcagcatcgaaacc
ctgtcacagatggccggggagtatcaggatcagctgctgagcttcgataccgagaaagcc
actctcaacaaagcccttgccagcgctcagaaagagctgcaactggcacgcagacaggat
ttgaatcaacaggcctcggctgcctatttgcgcctctccgagcttaaggaaaccgaaagc
cagttaagccagcagcaaagcagcctgctgcagcggcacaatcaattgcccggtgcagtc
tcatccgcacgtcaggcattgatgcaacatcaaaaggcacctctgtcggcgcccgatacc
gccatggggctgctgcaacaaacccagcggcagtattacgagcaaaatctggcgacgctg
gaggccgagcaaacctccagccaaaaacgtatcgagctggttcagctgcggcttaaagtg
gttcgtgcccaactggcgcagcaagagctgtttatcgaaaagctgaaccgtgccatcagt
aacgagcgccaggcaattaccgatgccaccctcgccgacagcctcgcccccgccacatcc
accgatgacgccctcacccgccgccttaaggccaacaacgaattgctcgggcagaagctg
caaaccctcacgctgcaaattgataatgtggtggaccagcaggaagccgccgagaaacgc
tatcaggagcagtcgctgcaaatatccaacatccaggagcagattgcctgggtgaagacc
aattccgcttttggcgagcgcttcctgcagatgttgcaaaacctgcccaagccccccaat
caggaagcgttgcaaaaccagattgccgatacccgcctggcgcgataccagatggagcag
gatctggcccgcaatcaagaacagctggatgaaaaagcacagttcagcgatgcccagtat
cagttgctgcaagccgagagcaagctgctgaagcagctgctgcagggattcgatcaactg
ctcagcgaactggccaaactcaaggtgagtcagaacaatctcaccgcccaataccacacc
ctgaaaaacaccctcagcgagcacctgttttgggtgcccaatgccgcgccaatcggcaag
ttgtgggttacggatctgcaccgcagcctgatttggctggtccaacaggcaccctggcag
cagttatcacaggcactggatgagcaaagcgattattggtcctggtggctgatcctgttg
gtgctttgcctggtggtacaggacatagtcaaaccccgtttcgatcgcgccctgagccgc
tttattgcgcctgtgggtaacgtgacccaggatgactttatctacacctttgagaccctg
ctggtcaccatgggttacgccttgctgcgtccaagcccggtgatcctggccggggccttc
tttatgctgagtcagtacaatctggtacaggccgttggctgtggcctgctggtgatgggc
tgtgtgtatctggtgtaccgctttatgtttttgctgtcggtggaaaaaggcgtgttgatt
ggccacttccgtcgtcccaaagaggtcatagaacacggcaagcagcggctgaaatccctg
atgctgatcaccattcccctggtggccatcgtcagctttaccgaaattctggaattgtcg
ctggtgcgtaacagcctcggccgcggcgcctttatcatcctgtgtttgcagctgttctgg
ttctaccgcgatatccttaactttgcccgcaaataccgcgccgaacagcaggacccgggg
aagaaccgccgactgctgcagcggcttttgtggatggtactgctgctgacgccggtgata
agtgcggtactggcctggcgcggcttctacttcaccgccttccagctgctgctgcaattg
cagctgtcgctactgctggcactgggctttttgctgctgtatcagctgattaaacgttgg
atgctgattgagcggcgccgaatcgccttcgatcgcgccaaggccaaacgggccgaaaag
ctggcccagcgtgaacggggcgaaacagtacttgccgacagtcaggacgtgtacgaagag
cccaaggtcgatttggaaaccatctccagtcagtcgctggggctggtgcgctctttgctg
atcctggccttcctcgccagtttgattggtctgtggacccaaacccactcggccatgttc
tccttcctcgatggcattaacctgtggaacagcaccgcgctgattgatggcagcgaacag
ttggtgcccgtgaccttaaagtcagtgttgtttggcattcttatcatggtgttttcgctg
atgattgccaccaacctgcccggcctgcttgagctggtgctgttgcagcgtctcgactta
accccgggtaccggctttgccattaccacggtgagccgctatctggtggtgatggtgggc
accctggtgggcttctctaccctggggatggaatggtccaagctgcagtggcttattgcg
gcgctgtcggtgggcctaggctttggtttgcaggagattttcgccaactttatctcgggt
ctgatcatcctgtttgaaaagccggtgcggattggcgatacggttaccatccgtgacctc
acaggtactgtcagtaaaatccaaatccgcgccaccacgattatcgattgggatcgcaaa
gaaatcatcgtgcccaacaaggcctttatcaccgagcagctgattaactggtcgctgtca
gaccccatcacccgggtcatcatcaaggtggcggtggcgcgggactcagatccagccaag
gtggaagccagtctttatcaggctattaaggaatgtcagcacgcgctgcatacccctgag
cctgaagtctggtttgccggttttggtcagcatactcaggactatgaggtgcgcgcctat
gccaaggatatgggtgcccgctggccactgagacacgatctacacaaacggatcagtgcc
aaactcaaggaaaacaaccttgaactggcgttcccgcagatggaaatcaccatcaaccaa
accaccaatgtgccagggcgtgactcgcagttgcagctgcgctga
DBGET
integrated database retrieval system
