Shewanella khirikhana: STH12_03055
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Entry
STH12_03055 CDS
T06711
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_03055 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_03055 (deaD)
03009 Ribosome biogenesis [BR:
skh03009
]
STH12_03055 (deaD)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STH12_03055 (deaD)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STH12_03055 (deaD)
Ribosome biogenesis [BR:
skh03009
]
Prokaryotic type
rRNA helicases
STH12_03055 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_19
HD_4
Motif
Other DBs
NCBI-ProteinID:
AZQ12119
LinkDB
All DBs
Position
3455573..3457477
Genome browser
AA seq
634 aa
AA seq
DB search
MSSNEKTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAF
ALPLLCSVDAELNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQ
ALRRGPQVVVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPES
RQLALFSATMPEQIKRVANKHLRNPVNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI
ERATNSRISPMKVPSPESVAERRLSRLGEQVAGILANEHLDFMKGAVAQLCQQLEVDTEQ
LAAALLHQVQLERPLQLPAMHERQRDNFDERTGRGERGERGDREGRGERRRDNRPLPGNL
GSADPLKDNPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVD
LPDGMPKEVLQHLRKVRVCGKPLNIREVSADGNDEIPQSNGPVPKRPRKPAGERGDRKFN
DRGGDRGDRGDRKFGERKNFDKKPDRKPRRPKED
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaaaaaactttccgtgaactcggtctgaccgagtccgttctgcgtgcc
cttgacgagctgggttatgaaacccctacgccgatccaggccgccagtattcagccactg
atgtctggccaggacatcctgggtcaggcacaaactggtaccggtaaaaccggcgccttc
gccctaccactgctgtgcagtgtcgacgccgagctgaatgccccgcaaattctggttttg
gcccctacccgcgaactggcggtgcaggttgctgaagcctttaccagctatgccaagcac
atgaagggtttccacgtactgccaatctacggcggccagagcatgtatcagcagctccag
gccctgcgccgtggtccacaggtggttgtgggtaccccaggccgtgttatggaccatatg
cgtcgtggcaccctgaagctcgactctctgaaagccctggtgctggatgaagccgatgaa
atgctgaaaatgggctttatcgacgatatcgaatggatcctcgagcacaccccagagagc
cgccagctggcgctgttctcggccaccatgcctgagcagatcaagcgcgttgccaacaag
cacctgcgcaacccggtgaacatcagcatcgccgccagccacaccacagtggactctatc
gagcagcgctttgtgcaggtatcccagcacaacaaactcgaagccctggtacgggtactg
gaagtggaaaacaccgaaggtatcatcatcttcgtgcgtacccgtaactcctgcgtggag
ctggctgagaagctggaagcccgtggctatgccgcatcgcctctgcacggtgatatgaac
cagcaggcccgtgagcgcgccgttgatcagctgaaatccggcaagctggatattctgatt
gccaccgacgtggccgcccgtggtctggacgttgagcgtatcggccacgtagttaactac
gatattccttacgataccgaagcttacgtacaccgtattggtcgtactggccgcgccggt
cgtaccggtatggcaattctgttcgtgaccagccgtgaaatgcgcatgctgcgcaccatc
gagcgcgccaccaacagccgtatctccccgatgaaggtgccaagccctgagtccgtggcc
gagcgtcgtctgtctcgcctgggtgagcaggttgccggcatcctcgccaacgagcacctg
gacttcatgaaaggcgccgtagcacagctgtgtcagcagctggaagtggataccgagcag
ctggcagccgccctgctgcatcaggtgcagctggagcgtccgctgcaactgcctgccatg
cacgagcgtcagcgtgacaacttcgacgagcgcaccggtcgtggtgagcgcggtgagcgt
ggcgatcgcgaaggccgtggcgaacgtcgccgcgacaaccgtcctctgcctggcaacctc
ggcagcgccgatccgctgaaagacaatccggacatcagcatgaagcgctacctcatcgat
gtgggtcgtgaccacaacgtgggtgtgggcaacatcgtgggcgccatcgccaacgaagcc
aacatcgacagccgctacatcggccagatccagctgtacgatgcggtgactaccgttgac
ctgccagacggcatgccaaaagaagtactgcagcacctgagaaaagtgcgtgtatgtggc
aagccactgaacatccgtgaagtgagcgccgacggcaacgacgagatcccgcaaagcaac
ggtcctgtccccaagcgtccacgcaagcctgccggtgagcgcggcgatcgcaagttcaac
gaccgcggtggcgaccgtggagatcgtggcgaccgaaagtttggcgaacgtaaaaacttc
gacaagaagccggatcgcaaaccacgtcgtccaaaggaagactaa
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