Shewanella khirikhana: STH12_03135
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Entry
STH12_03135 CDS
T06711
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_03135 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_03135 (rhlB)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STH12_03135 (rhlB)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STH12_03135 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SgrT
AAA_22
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZQ12199
UniProt:
A0ABN5TXL9
LinkDB
All DBs
Position
complement(3554074..3555393)
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AA seq
439 aa
AA seq
DB search
MSETHLTQQKFADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKT
LAFLVATFNHLLTTPIPDNRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYG
GEGYETQRKVLDKGVDVLIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKDRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSM
EDKLKLLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILE
QFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIEDYIKHSIPVTSYDRDALIDIPPPVKIHRKPHTGGRNLRDRNGSPRPSG
AHRSGGGRPPRHDRTRRHS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacacttaacccaacaaaaatttgccgacctgcccttgtgtgacgaggtc
aaacaggcacttaacgaaaacggcttcgagcattgtacgccaatccaggcgctttccctt
ccggtactgcttgagaaaaaagatatcgccggccaggcccaaaccggcactggtaaaacc
ctcgccttcctggttgccacttttaaccacctgctgactaccccgattcctgataaccgc
cagctgaatcagccgcgtgcgattgtcatggcgccaacccgcgaactggcgattcagatt
gccaaagatgcgaccctgctgtccaagcacagcggcctcaaggtgggtattgtttacggc
ggtgaaggctacgagacccagcgtaaagtactggataaaggcgtggacgtactgattggt
accaccggccgtatcatcgactatgtgcgtcagggcgttatcaacttaagcgctatccag
gctgtggtactggatgaagccgaccgcatgttcgatctcggttttatcaaggatatccgc
ttcctgttccgccgtatgccagatgccaaagaccgtctgaacatgctgttttctgccacc
ctgtcgatgaaggtacaggagctggcgtacgatcacatgaacgaccctgtgaaggtggaa
attgccccggaggaaaaaacctcccgcaatatcaaagaagaaatcttctacccttccatg
gaagacaaactcaagctgctgcactcactgattgaagaagactggcccgaaaaggccatt
gtgtttgccaacaccaaatatcagtgtgaaaacctgtgggcgagcctggaggccgatggc
caccgtgtgggcctgctgaccggtgacgtgccgcagaaaaagcgtttgaagatcctcgag
cagttcacccagagtgagctcgatatcctggtggccaccgacgtagccgcccgtggtctg
cacatctctgatgtgtcccacgtgtacaactacgatctgcccgatgactgcgaagactat
gtacaccgtatcggtcgtactggccgcgccggtcaaaaaggcgtgtcggtaagctttgcc
tgtgaggaatatgccctcaacctgccggccatcgaagactatatcaagcacagcatccct
gtgacctcttacgatcgcgatgccctgattgatattccaccgccggtgaaaatccatcgc
aagccccataccggtggccgcaacctgcgcgatcgcaatggttcaccacgtccatccggt
gcccatcgcagcggtggtggccgtcctccccgtcacgacaggacccgcagacactcataa
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