Shewanella khirikhana: STH12_03265
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Entry
STH12_03265 CDS
T06711
Symbol
speF
Name
(GenBank) Ornithine decarboxylase, inducible
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
skh
Shewanella khirikhana
Pathway
skh00330
Arginine and proline metabolism
skh00480
Glutathione metabolism
skh01100
Metabolic pathways
skh01110
Biosynthesis of secondary metabolites
skh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
STH12_03265 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
STH12_03265 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
STH12_03265 (speF)
Enzymes [BR:
skh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
STH12_03265 (speF)
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Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
GKRP_SIS_2
Motif
Other DBs
NCBI-ProteinID:
AZQ12325
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All DBs
Position
3720363..3722525
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AA seq
720 aa
AA seq
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MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPI
FVSVCCEEAFPDDFCDAITGVFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVE
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMCNADVKLGDLLIHEGAPHDAQ
AYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVAPERVQEARPFRLAIIQLGTYDGTIYNA
RQVVDRIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELGADDPGIIVTQSVHKQQAGF
SQTSQIHKKDRHIKGQQRYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGTSGRYL
WREAVKAGIEARKLLLKKCKYIKPFIPTTVEGEPWQSFDTELMADDLRFFEFEPGLKWHA
FEGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSIL
FLMTPAEDMAKMQHLVAQIARFEKLIDEDAPLSEVLPNVYRANRERYEGYSIRRLCQEMH
DLYVSRNVKQLQKEMFRAAHFPKAVMNPQDANIAFVRGKAELVPLSEIEGQIAAEGALPY
PPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERSDSGRVQAMGYVLKH
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttaaaaattgctgccagcttatctgttcgcgcctgttttgatactaaacgg
gaagtcgtcaacgttttaaccacagacttttgtgatgtgggtgccgccgttgtttctgtt
actgacgtaaataatggcattgtcgataaaattaaaaataccggtttgaatttaccgata
tttgtttctgtttgctgtgaagaagccttccccgatgatttttgcgacgccatcaccggg
gtatttgaactctgtaatgccaaaaccgacttttatggcaaacaggtcgaaactgcggtg
cgccgttatcaggaatccctgctgccgcccttcttcggcaccctgaaaaagtacgttgaa
atgggtaactccacctttgcctgcccagggcatcagggtggccagttcttccgcaagcat
cccgttggtcgtcagttctttgatttctttggcgaaactgtattccgctcggatatgtgt
aacgccgacgtgaagctcggtgacctccttatccacgaaggcgccccccacgacgcccag
gcatacgccgccaaggtgtataacgccgacaaaacctactttgtattgaacggcacgtcc
gcctcaaacaaggtggtgtgtaatgccctgctcgcccccggcgatctggtgctatttgac
cgcaacaaccacaaatccaaccaccacggcgccctgattcaggccggtgccactcctgtg
tatctggaaacggcccgtaaccccttcggctttatcggcggcatcgactcccactgtttc
gatgaagcctacctgcgggacgaaatcggcaaggtcgcccctgagcgggtacaggaggcg
cgccccttccgcctcgctatcatccagcttggcacctacgacggcaccatctacaacgcc
cgtcaggtggtggatcgcatcggtcacctgtgtgactacatcctgtttgactcggcctgg
gtgggctacgagcaattcattccgatgatgaaagactgctcgccgctgctgttggaactc
ggcgctgacgatcccggcattatcgttacccagtcggtacacaagcagcaggccgggttc
tcacaaacctcgcaaatccacaaaaaagaccgccatatcaagggacaacagcgctactgc
aaccataagcgtttcaacaacgcctttatgatgcacgcctccaccagccccttctatccg
ctgtttgcggcgctggatgtgaacgccaagatgcacgaaggcaccagcggccgttatctg
tggcgcgaggcggtaaaagccggtatcgaagcgcgcaagctgctgctgaaaaagtgcaag
tacatcaagccctttatcccaaccactgtggaaggcgagccctggcagagctttgatacc
gagctgatggccgatgacctgcgctttttcgagtttgagccaggccttaaatggcacgcg
ttcgagggctacgagaagggccagtactttgtcgacccctgtaagttcctgctcaccacc
cccggcatcaatgccgagaccggcgagtacgaagacttcggtatcccggccaccatcctt
gccaacttcttgagggaaaacaacatcatccccgagaagtgcgaccttaactccatcctg
ttcctcatgacccccgcagaagacatggccaagatgcagcatctggtggcccagatagcc
cgtttcgagaagctgattgacgaagatgcgcccttaagcgaggtgctgcccaacgtctat
cgcgccaaccgcgagcgctatgagggctacagcatccgtcgcctgtgtcaggaaatgcac
gacctctatgtcagccgcaacgtgaagcagctgcaaaaagagatgttccgtgccgctcac
ttccccaaagcggtgatgaacccgcaggacgccaatatcgcctttgtgcgcggcaaggcc
gagctggtgccgctcagtgaaatcgaaggccagattgcggccgaaggcgccctgccttac
ccacccggcgtgctctgtatggtgcccggcgaggtttggggcggcgcggtgcagcgctac
ttcctggcgctcgaggaaggcatcaacctgctgccgggcttcgcccccgagctgcagggc
gtgtatctggagcgcagcgacagcggccgggtacaggccatgggttacgtgctcaagcat
tga
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