Shewanella khirikhana: STH12_03405
Help
Entry
STH12_03405 CDS
T06711
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skh03021
]
STH12_03405 (rpoH)
Transcription machinery [BR:
skh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
STH12_03405 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GntR
2Fe-2S_thioredx
UCR_14kD
HTH_DeoR
HTH_25
Motif
Other DBs
NCBI-ProteinID:
AZQ12465
LinkDB
All DBs
Position
complement(3864872..3865729)
Genome browser
AA seq
285 aa
AA seq
DB search
MTGQTQSMALMVPQGAGSLEAYIHSVNSMPMLEAEQEYQLAKRLQETGDLQAAKQLIMSH
LRFVVHVAKSYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNLRKAKQRLGWFSDDEVAMVAENLGVSKEDVTEMESRMAA
QDQAFDLVNDHDDDESFAPVHYLEDHSSDLAANIENDNWESAAQNRLLSAIKTLDERSQH
ILRARWLDDDKVTLQELAEQYQVSAERIRQLEKNAMNKLKACMEV
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgactggacaaacgcaatcaatggcactgatggtcccccagggagcaggtagccttgaa
gcttatattcactcggtcaacagcatgcccatgctggaggcggagcaggagtatcagctc
gccaagcgtttgcaggaaaccggtgacctgcaggcggctaagcagctgattatgtcccac
ctgcgctttgtagtgcacgttgccaaaagttactctggctacggtctgcctcaggctgac
cttattcaggaaggcaacataggtctgatgaaggccgttaagcgattcgatcccgatgta
ggcgtgcgtctggtatcctttgctgtgcattggattaaagccgagatccacgaatacgtc
ctcaaaaactggcgcatcgtcaaggtggccaccaccaaggcacagcgcaagctgttcttt
aatctgcgcaaggctaaacagcgtctgggctggttctcagatgatgaagtggccatggta
gcggaaaaccttggggtatcgaaggaagacgtaactgagatggagtcgcgcatggcggcc
caggatcaggccttcgatctggtgaacgaccacgacgatgacgagagcttcgcgcctgtg
cattatctggaagaccactcttccgatttggcggccaacatcgaaaacgacaactgggaa
tctgctgcccagaatcgtttgctgtcggccatcaagactctggacgagcgcagccaacac
attctgcgtgcccgctggttggatgacgacaaagtcaccctgcaggagctggctgagcag
tatcaggtatctgccgagcgtattcgccagcttgaaaagaatgccatgaacaaacttaag
gcctgcatggaagtctaa
DBGET
integrated database retrieval system
