Shewanella khirikhana: STH12_03419
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Entry
STH12_03419 CDS
T06711
Symbol
rna
Name
(GenBank) Ribonuclease I precursor
KO
K01166
ribonuclease T2 [EC:
4.6.1.19
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_03419 (rna)
Enzymes [BR:
skh01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.19 ribonuclease T2
STH12_03419 (rna)
Transfer RNA biogenesis [BR:
skh03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
STH12_03419 (rna)
Prokaryotic type
STH12_03419 (rna)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_T2
Motif
Other DBs
NCBI-ProteinID:
AZQ12479
UniProt:
A0ABM7DRZ9
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All DBs
Position
3878074..3879045
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AA seq
323 aa
AA seq
DB search
MSLLRRLIPLIALSLVASAKADTFVADQNCPLYQSKNKLTNPGEVMTVPGQRYSVLEVLG
NPNRPDWVRLETAALTSSARWVNGRCGKIEQQGASADSGRCDLAGEQDSHILALSWQGAF
CELYGKGKRECHALEGNPDDARWQALTLHGLWPNKASCGTDYGFCGSVHQKARGFCNYPA
ITLNKEAETALAGVMPSAEFSTCLDRHQWWKHGSCQTMDASDYFIEAARLTRLVNESRMV
KALAQSSGKMQTTANLRKLFTEEFGKHSGKRVSFHCSRGLLTEVRLSLPDRLDSSIEIKH
LMARSGPDLRDSCPASFLVDKPG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgttgcggcgccttatcccgctcattgccttaagtcttgttgcgtcggcaaag
gccgatacctttgttgctgaccaaaactgccccctgtatcagtccaaaaacaaactcacc
aatccaggtgaggtgatgacagtccccggacagcgttattccgtattggaagtattgggt
aaccccaatcgccctgattgggtgcgtctggaaacggcagctctcacctcgtcggcacgt
tgggtgaatggacgctgcggtaaaatagagcagcagggagcaagcgccgacagcggccgc
tgtgatctggcaggcgagcaggacagccatattctggccttgagctggcaaggtgcattt
tgcgaactttacggtaagggcaaacgtgagtgtcatgcgctggaaggcaaccccgacgat
gctcgctggcaggcacttaccctgcacggtctgtggcccaacaaagccagttgcggtacc
gactatggtttctgcggctcggtacaccaaaaggcacgcggcttttgtaattatccggcc
attactttgaacaaagaggcggaaactgccctggcgggcgtgatgccgtcggctgagttt
tccacctgtctggatcgtcaccaatggtggaagcatggcagctgtcagaccatggatgcc
agcgattactttatcgaggccgccaggctgacccgattggtgaacgagagccgcatggtc
aaggcactggcccagagcagtggcaagatgcaaaccaccgccaatttacgcaagttgttt
accgaggagtttggtaagcacagcggcaagcgagtgagctttcattgcagccgtggcctg
ctgaccgaagtgcgtctgagtctgccggacaggctcgacagttcgattgaaatcaaacac
ctgatggcccgcagcggccccgacctcagagacagctgcccggccagttttctggtggac
aagccaggctga
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