Shewanella khirikhana: STH12_03542
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Entry
STH12_03542 CDS
T06711
Symbol
ycaO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase accessory factor YcaO
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
skh03009
]
STH12_03542 (ycaO)
Ribosome biogenesis [BR:
skh03009
]
Prokaryotic type
ribosomal protein modification factors
STH12_03542 (ycaO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
Motif
Other DBs
NCBI-ProteinID:
AZQ12601
LinkDB
All DBs
Position
4011840..4014023
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AA seq
727 aa
AA seq
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MEIKVNFLDNLRIEAKFDDFTVVADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCV
SRDIPTEGIRLSQNNIVDPENRYNQQFKIQVELPESISDKDREGILRSIDRCTVKKVVQT
GPEFVIETVENLDEDAQAMLMVKPDGDHSTFIVGKDLPLEQTIANMTAKLAELGMKIEIS
SWRNLVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEE
IANAEFVHYPNEKWFPLEEDDSLPSGLLDEYCLDIYDNDGELCGSHLVDTNSGNYERGIC
AIPYTRHSDGETVYFPSNLIENLFLSNGMSAGNNLAEAKVQCLSEIFERAVKRQIIEEEI
ALPDVPQEVLAKYPSIVAGIEALEAQGFPVVVKDASLGGQFPVMCVTLMNPRTGGVFASF
GAHPSLEVALERSLTELLQGRSFEGLNDVQKPTFNSMAVQEPENFVEHFIDSTGVISWRF
FSAKHDYEFVEWDFSGSNEEESAALFGILEDLGLEAYVAEFTALGSACRILVPGYSEVYP
VTDLIWDNTNKALDFREDILNLHRLSDAELADLVERLEESELDNYTDIITLIGIEFDENT
VWGQLTILELKLLCYLALGELEAAQELTETFLQYNDNTVARGLFYQAMSAVLEISLDDEL
ALDDYRHNLSRMFGEETMAAVIGSVEGRVRFHGLTPTSTKLEGLDRHQRLIESYKKLHAA
RAKLAGL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaagttaattttctcgataacctgagaatcgaagccaagttcgacgacttc
accgtggttgccgaccaaccgattcgctacaagggcgatggctcggcccccagtccgttc
gactacttcctggcttcttccgccctgtgcgccgcctattttgtgaaggtgtactgcgtg
tcgcgggatattcccaccgaaggtatccgcctgtcgcaaaacaacattgttgacccggaa
aaccgctataaccagcagttcaaaattcaggtggaattgccagagagcatcagcgataaa
gaccgcgaaggcattctgcgctccatcgaccgctgcaccgtgaaaaaagtagtccagacc
ggccccgagttcgttatcgaaaccgtggaaaacctcgacgaagatgcccaggccatgctg
atggtgaagccggatggcgaccacagcacctttattgtgggtaaagatctgccgctggag
cagaccatcgccaatatgaccgccaagctggcggagctgggaatgaagattgaaatctcc
agctggcgcaacctggtgcccaacgtctggtcgctgcatatccgcgacgccgcctcgccc
atgtgtttcaccaacggcaaaggcgccaccaaagaaagcgccctgtgctcggcgctgggt
gagtttatcgagcgtcttagctgcaacttcttctataacgatcagtactttggtgaagaa
attgccaatgccgagttcgtgcattaccccaacgaaaagtggttcccgctggaggaagac
gattcactgccttcaggcctgttggacgagtattgcctcgatatctacgacaacgatggc
gaactgtgtggctcgcatctggtggataccaactcgggcaactatgagcgcggcatctgc
gccatcccttacacccgccacagcgatggcgagaccgtgtacttcccgtccaacctgatt
gaaaacctgttcctcagcaacggcatgagcgctggcaacaacctggccgaagccaaggtg
cagtgcctgtcggaaatcttcgagcgcgcggttaaacgccaaatcatcgaagaagaaatc
gccctgccggacgtgccccaagaagtgctggccaagtaccccagcatagtggcgggtatc
gaagcgctggaggcccagggtttccctgtggtagtgaaagacgcctccctcggcggccag
ttcccggtgatgtgcgtaaccctgatgaacccacgcaccggcggcgtatttgcctctttc
ggcgcccacccaagcctggaagtggcactggagcgcagcctcaccgagctgctgcagggc
cgcagcttcgagggtctgaacgatgtgcaaaagccgaccttcaacagcatggcggtgcag
gagccggagaacttcgttgagcactttatcgactccaccggagtgatctcctggcgcttc
ttcagcgccaaacacgactacgagttcgtggaatgggatttctccggcagcaatgaagaa
gaatccgccgccctgttcggcatcctcgaagatctggggctggaagcctatgtggccgaa
tttaccgcccttggcagcgcctgccgcattctggtgcccggctactccgaggtatatccg
gtgaccgacctgatttgggacaacaccaataaggcattggatttccgtgaagatatcctc
aacctgcaccgcctcagcgacgccgagcttgccgatttggttgagcgcctcgaagagagc
gagctggataactacaccgacatcatcacccttatcggtatcgaatttgatgaaaatacc
gtttggggccagctgaccatcctcgagcttaagctgctgtgctacctggcactgggcgag
ttggaagcggctcaggagctgacagaaaccttcctgcagtacaacgacaacacggttgcc
cgcggcctcttctatcaggccatgtcggcagtgctggaaatcagcctcgacgacgaactg
gcgctggacgactaccgccataacctcagccgcatgttcggcgaagagaccatggcggcc
gttatcggttcagtggagggtcgggttcgcttccatggcctcaccccaaccagcacaaaa
ctggaaggactggatcgccatcagcgtttgattgaaagctacaagaaactgcacgccgcc
cgagctaagctggccggattataa
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