Shewanella khirikhana: STH12_03906
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Entry
STH12_03906 CDS
T06711
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
skh
Shewanella khirikhana
Pathway
skh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STH12_03906 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skh03021
]
STH12_03906 (rpoC)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_03906 (rpoC)
Enzymes [BR:
skh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STH12_03906 (rpoC)
Transcription machinery [BR:
skh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
STH12_03906 (rpoC)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
STH12_03906 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AZQ12948
UniProt:
A0ABN5U0U0
LinkDB
All DBs
Position
4401906..4406120
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQGKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDSLEEYGDEFEAKM
GAEAVLDLLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRERVNGRGEGMAFESVAEAEKAYRVG
AAELHARVKVRITETIVGDNGERTKQRRIVDTTVGRAILSQILPAGLSFDLVNQDMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHYATISGASVGINDMVIPEEKYTLVADAEAE
VIEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRQGEEEKQKSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGATEGLSMKPLIEGGDVVEPLRERVL
GRVVAEDVFYPGTDEVLAPRNTLLDEAWCDKLEQHSVDEVQVRSVITCETDFGVCAKCYG
RDLARGHIINMGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKL
HNAKYVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLDTKEGAEVNAGQIIANW
DPHTHPIITEVAGSIKFVDMIDGVTITRQTDELTGLSSIVVLDVGQRTSAGKEMRPAVRL
VDDNGNDLTIPGTDVPAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPR
VADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPNDGGDAYEEMIPKWRNLNVFE
GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCIITQAGDSEFLEGEQVEVARVKIANRDLEAAGKLPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGFAYHTNRAKARAAGEETA
APTITASEAEQNLADLLNLAGSQE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcagggtaagaccgaagagtttgaaggcatc
aagatcggtctggcttctcccgacctgatccgttcatggtcttttggtgaagtgaaaaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgcgaaggtctgttctgtgcccgc
atcttcggtcctgtgaaggactacgagtgtctgtgtggtaagtacaagcgtctcaagcac
cgcggtgttatctgtgagaagtgtggcgttgaagtcacccagaccaaagtacgtcgtgag
cgtatgggtcacatcgaactggccagcccagttgctcacatctggttcttgaaatcactg
ccgtcccgtatcggtctgatgctggatatgacgctgcgtgatatcgagcgcgtactgtat
ttcgaatcttacgtggttatcgagccaggcatgaccagcctggagcgcggtcagatgctg
accgaagaaaactacctggattctctggaagagtacggtgatgaattcgaagccaagatg
ggcgccgaagccgtactggatctgctgcgtgccatcgacctcgagaaagaaatcgagcag
atgcgcgaagagctgccatccatcaactctgagacccgtcgcaagaaagtgaccaagcgt
ctgaagctgatggaagccttctacacttctggcaacaagccagagtggatgatcctgaaa
gtgctgccagttctgccaccggacctgcgtcctctggtaccactggacggcggccgcttt
gcgacttccgatctgaacgatctgtatcgccgtgtgatcaaccgtaacaaccgtctgaag
cgtcttttggatctggctgcgccagacatcatcgtacgcaacgaaaagcgtatgctgcag
gaatctgtggatgcgctgctggacaacggtcgtcgtggccgtgccattaccggttctaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactctggccgttcggtaattaccgtaggtcctacc
ctgcgtctgcatcagtgcggtctgccaaagaaaatggcactcgagctgttcaagcccttc
atctacggcaagctggaaggtcgtggcctggccaccaccatcaaagccgccaagaagatg
gtagagcgtgaagttgcagaggtttgggacgtactggatgaagtgatccgcgaacaccca
gtgatgctcaaccgtgcaccaacactgcaccgtctgggtattcaggcgttcgaacctgta
ctgattgaaggtaaggcaatccaactgcacccactggtgtgtgcggcatacaacgccgac
ttcgacggtgaccagatggcggtacacgtacctctgactctggaagctcagctggaagcc
cgtgcgctgatgatgtctaccaacaacatcctgtcgccagctaacggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtactacatcagccgtgagcgtgtaaacggt
cgcggtgaaggcatggcgttcgagtctgttgccgaagctgaaaaagcgtaccgcgtaggt
gctgccgagctgcacgcccgcgtgaaagtacgtatcaccgaaaccatcgtgggtgacaac
ggtgagcgtaccaagcagcgtcgtatcgttgataccactgttggtcgtgccatcctgtcg
caaatcctgccagcaggtctgtctttcgacctggtgaaccaggacatgggcaagaagcag
atctccaagttgctgaacacctgttaccgtcagctgggtctgaaagataccgttatcttc
gctgaccaactgatgtacaccggtttccactacgccaccatctctggtgcctccgtgggt
atcaacgacatggtgatcccagaagagaagtacactctggttgccgacgccgaagccgaa
gttatcgagatccaggagcagttccaatctggtctggtaaccgccggtgagcgttacaac
aaggtgatcgacatctgggcaagcgccaacgagaaggtgtccaaggccatgatggaaaac
ctgtctactgagacagtgattaaccgtcagggcgaagaagaaaagcagaagtcgttcaac
agcatctacatgatggccgactcaggcgcgcggggtagtgccgctcagatccgtcagctg
gcgggtatgcgtggtctgatggccaagccagacggctccatcatcgaaacgcccatcgtg
gcgaacttccgtgaaggtctgaacgtactgcagtactttatctctacccacggtgctcgt
aagggtctggcggataccgcacttaagactgcgaactccggttacctgactcgtcgtctg
gtggatgtggcccaggatctggtgatcatcgaagacgactgcggtgcgaccgaaggtctg
tccatgaagccgctgatcgaaggcggtgacgtggttgagccgctgcgtgagcgtgtactg
ggccgtgtggttgccgaagacgtgttctacccaggtaccgacgaagtgctggcacctcgt
aacactctgctggacgaagcctggtgtgacaagctcgaacagcacagcgttgacgaagtt
caggttcgctcagtaattacctgtgaaaccgactttggtgtgtgtgccaagtgttacggc
cgcgacctggcccgtggtcacatcatcaacatgggtgaagccatcggtgtggttgcagcc
cagtcaatcggtgaaccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgagcgtctgccgaaaacagcgtacaggtgaagaacgccggtactctgaagttg
cacaacgccaagtacgttaccaacagcgacggcaaactggttatcgtgtctcgttcttct
gagctggccatcatcgatgagctgggtcgtgagaaagagcgctacaaggtgccttacggt
accgtgcttgacaccaaagaaggtgccgaggtgaatgccggccagatcattgcgaactgg
gatccgcacactcacccaatcatcactgaagtggcaggtagcattaagttcgtagacatg
attgacggtgtaaccattacccgtcagaccgacgaactgaccggtctgtcttcaatcgtg
gtactggacgtaggtcagcgtacctctgccggtaaagaaatgcgtccagcagttcgtctg
gtagatgacaacggcaacgacctgactatcccaggcaccgacgtgccagcgcagtacttc
ctgcctggtaacgcgattgtgaacctggacgacaacgccaagatcagcgtgggtgacgcc
ctggctcgtattcctcaggaatcgtccaagacccgcgacatcaccggtggtctgccacgg
gttgctgacttgttcgaagcccgtcgtccaaaagagcctgctattctggccgaaatcagc
ggtactatctccttcggtaaagaaaccaaaggtaagcgccgtctggttatcaccccgaat
gacggtggcgatgcttacgaggaaatgattcctaagtggcgtaacctgaacgtgttcgaa
ggtgaaaaggttgagcgtggtgaagttatcgccgacggtccagagtcagctcatgacatt
ctgcgtctgcgtggcatccacaacgtggccaattacatcgtgaacgaagtacaggacgtt
taccgtctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcattcgccagatg
ctgcgtaagtgcatcatcacccaggccggtgactctgagttcctggaaggtgaacaggta
gaagtggctcgcgtgaagattgccaaccgcgatctggaagctgccggtaagctgccagcc
aagttcgaacgtgaactgctgggtattaccaaggcgtctctggcgactgagtccttcatc
tctgctgcctcgttccaggaaaccacccgcgttctgaccgaagcggctgttggcggcaag
tccgacaacctgcgcggtctgaaagagaacgtgattgtgggtcgtctgatcccggctggt
accggtttcgcttaccacaccaaccgcgccaaggcgcgtgctgcgggtgaagaaactgcg
gctccgaccatcactgccagcgaagctgagcagaacctggcggatctgctgaacctggcc
ggtagccaagagtaa
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integrated database retrieval system
