Shewanella khirikhana: STH12_04001
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Entry
STH12_04001 CDS
T06711
Symbol
rhsB
Name
(GenBank) putative deoxyribonuclease RhsB
Organism
skh
Shewanella khirikhana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
PT-HINT
RHS
Intein_splicing
TEN_YD-shell
Tox-REase-9
PepSY_2
Hint_2
AXH
Motif
Other DBs
NCBI-ProteinID:
AZQ13035
LinkDB
All DBs
Position
4525684..4530405
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AA seq
1573 aa
AA seq
DB search
MKRMIAPAFALSLLAMSPLVTAVTVLKQGPDHSSGRFEQTVADIQVKVMGGHVAIVRDFK
DGDWRFFTPWSPIKYRQIYVPGPSTNPADGSYYDDERAIIRNGYTYELVKDSSPLRYVYD
GDTAIVKLEDGFRWQDRSGDWIEYGDDKRIRAYGDLQGTIAIIVHNGAGQIAELQDRFNN
KVLVFSYIGEALTTVTDHSGRSVRYQRDDKGRLTKVTDVRGNDWLYEYEEFAPSSSSYML
PYFLKSITDPESRVTTIKNVVVGGTVFKELKCEPPGSGTQELKEVVDPDTGMITIEVVDK
PGASSGEATCIMPPPQPIPTQMLTDAVIDHDGNRHSYVYSYSGQSSSYLVQEVDADGVQT
HRMLGPDGSIARLFRGGELVFSQARLEDTLIRLDSAGNKTKATFDEYNNVIRVENADGSY
RTTDYHPSYNLVTRSRDENGIVAEYIYDDQGLITKTIQAKGKPESLEISFEYDQNQQIQS
VHYQSLSGEQRQFEFEYDQFGNLIKETVNATLVYQYADFNALGDAQSLIDPRGKHWKYTF
DAEGRVLTETDPLLRKTTYQYDKVGNLVKVINPDNSEDLFAYNARNQVRSVTDPYGKVRQ
YKHNAMGVVTEFTDELGKTSGMVMDRAGRPAYRVDGNQNKTLITSGKDAETNQGAFEHLR
RVDYPTYSQVYQYNNRNQVAQLSVIESDKSSTYSFRYDPAGRAIVSTDPNGHSTYYTYDA
YGNLVEEDASGFITKYEYNAFGDLTRFTDRNNYVTEFEYDAFGQMTVKRRAGFGEWHYSY
DAAGNISVQTDPKGQGIRFEYDDANQLVAEHWYMQSPADPSEPAYKTLTYGYDTMGRLSQ
WQSGTYSGTFVWDKNGFLSAETVNYGSFNKTYRYGYFDNGTISGLQMPDGTQYSYEYDAN
NQLTRIQIPGQGSIWVNGFDWRAPTQETLPGGVERHFSYSGLLNIKQFQAIGTDGVPLLS
LDYEYSDAAKISQKQLDGDVTTYQYDDIYRLQLAETTSRDGSVRTETYVLDANGNRVGSH
SLSHWEYNDAGQLTVRGKDADKTTYQYDANGNLILKSQGNSFLKFTYDPLNRLIRVDNEK
DELVAAYDYDPFDRRISKRTSAGQRYFLYADEGLIAEYDDAGLEQLRIGYRPGTLWGTQP
VFLYGEHGAGGKKYAYFHNDQLGTPIKLTDASGHIVWDTKFDAFGNAILASSNEVVNPLR
FPGQYFDAETGLHYNWRRYYDPTSGRYITPDPIDLAGGPNLYTYVDGDPINRIDPNGECG
VFGVLGGLATEYAASKLTGSCFSYGWGDAIGDALCVGRLFKLAKLGKKVPCLGNSFTGDT
QVYTETGMRPISDIKVGERVWSYTEWNGQEQFEPVEEVIRNTREYLLVTLSLESDETIVA
TNQHPFYILGKGWVEAEDLQQGDPLYLSDKRTLHIRAITTEFRTETVYNLSVANANTFFV
GKDKVLVHNAKKGCKFDAKPCPKAGKPRDSKGRFTTGAGGNSEDTEIGQLAHEEFKAKAK
ARGWLTDKRVEYGDGSYGIPDAITQDGRPIELKPDTPSGRAKGRRQLKKYEKALGKKGRV
VYYDPKNFRGPKC
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgattgcacctgcatttgcgttgtcattgcttgccatgagcccattggtc
acagcggtcactgtgctaaaacaggggccagatcacagcagcggccgtttcgaacaaact
gtggcagatattcaggtcaaggtgatgggcggccatgttgccatagtccgtgattttaaa
gatggcgactggcgtttctttactccctggtcacccatcaaataccgccagatctatgtg
cccgggccatcgaccaatccggcagatggcagttactacgacgatgagcgtgcgatcatc
cgtaatggttacacctatgagttggtaaaggacagttcaccccttcgctacgtttatgat
ggtgataccgctatcgtgaaattggaggatggttttcgctggcaggatagatccggtgac
tggattgagtatggcgatgataagcgtatccgcgcctatggagacctccagggcacgata
gcgattattgttcataatggcgctggtcaaatagccgaattacaggaccgctttaacaac
aaggtgctggtgtttagctacatcggcgaggccttgaccacggtcacagatcacagcggc
cgcagtgtcagataccaaagggacgacaaagggcggctcaccaaggttaccgacgtccgc
ggtaatgattggctatacgaatatgaagaatttgccccaagtagcagtagttacatgctg
ccttacttcctcaaatccatcacagatcccgaaagccgagttaccactatcaagaatgtg
gtggttgggggtactgtctttaaagagcttaagtgcgagcctccaggcagtggcacccaa
gagttaaaggaggtggtcgatcctgataccggcatgatcacaatagaagtcgtggataaa
ccaggggcaagctctggggaagctacttgtatcatgccccctcctcagccaattccaact
cagatgctgacggatgccgtgatagatcacgacggtaatcgtcacagttatgtgtactct
tattcgggtcaaagcagcagctatctggtacaggaggtggatgcggatggcgtacagaca
catcggatgttggggccagacggctctatcgccaggttatttcgcggcggtgaactggta
ttcagtcaggcgcgactggaagataccctcattcgtttggactctgctggtaataaaact
aaagccacctttgacgaatacaataatgtcattcgtgtagaaaatgccgatggttcatac
agaaccactgattaccacccaagctataacctggtgacccgtagccgtgatgaaaatggc
atagtggcagagtatatctacgatgatcagggactaatcaccaaaactatccaagcgaaa
ggcaaacctgagtcgttggaaatctctttcgagtacgaccagaaccaacaaattcaatcg
gtgcattatcaaagtctaagtggagagcaaagacagtttgagtttgaatacgatcaattt
ggcaatctcataaaagaaaccgtaaacgccactcttgtataccaatatgccgattttaat
gcgctaggcgatgcccaatcgcttattgatccacgtggaaagcattggaaatataccttc
gatgccgaaggcagagtgctcactgaaaccgatcctctgctgagaaagactacctatcag
tacgataaagtcggaaatctggtgaaagtgattaatccagataattccgaagacttattt
gcttacaatgccagaaatcaggttcgttcagtcactgacccctatggcaaggtgcgccaa
tataagcacaatgccatgggggtggtaactgagtttactgatgaactgggcaaaaccagt
ggcatggtgatggaccgggcgggccgcccagcgtaccgggtcgatggtaatcaaaataaa
accctgattacctcgggtaaagatgctgaaaccaatcaaggcgcttttgagcatttacgt
cgcgtggattaccccacctatagccaagtataccaatacaacaaccgtaatcaggtagcg
caactctcggtaatcgaatcagataagagcagtacttacagttttagatacgatcctgcc
ggaagggcaattgtgtctactgaccccaatggtcacagcacctattacacctacgatgcc
tatggcaacctagtcgaggaagatgcatcaggctttatcaccaagtacgaatataacgca
tttggtgatctcacccgatttactgatcgcaacaattatgtcactgaatttgagtatgac
gctttcggccaaatgacggtcaagcgtcgtgccggtttcggcgagtggcactacagttat
gatgcggcaggaaatatctcggtgcagaccgatcccaaaggccagggtattcgctttgag
tacgatgatgccaatcaattggtagccgagcactggtatatgcaatcgccagcggatccc
agtgagccagcatacaagacactgacctacggttacgacactatggggcggttatcacag
tggcaatcaggcacctattccggcacgtttgtttgggacaaaaatggctttctcagtgct
gaaaccgtcaattacggcagcttcaataagacataccgttacggctattttgataatggc
accatctctgggctgcagatgcccgatggcacccaatatagctatgagtatgatgccaac
aatcagctgacacgcattcagatccctggtcagggctctatttgggtcaatggttttgac
tggcgggcccccactcaggaaaccctgccaggcggggtagagcggcatttcagctacagt
gggcttttgaatatcaagcagtttcaggccataggcaccgatggtgtacccctgctgtca
ctggactatgaatatagcgatgcagcaaaaatcagccaaaagcaattggatggcgatgtt
accacttaccagtacgatgacatttaccgcctgcaactggccgaaaccacatcgcgcgat
ggcagtgtaagaacagaaacctatgttctcgatgccaatggcaaccgtgtcggcagccac
tctctatcccattgggaatataacgatgccgggcaattaacggtacgtggcaaggatgca
gacaaaaccacttatcaatacgatgccaatggcaaccttatcctcaagagtcagggcaac
agttttctcaagtttacctacgaccctctgaatcgactgatacgagtcgataatgaaaag
gatgagttggttgctgcctatgattacgatcccttcgatcgccgcatcagcaaacgcacc
tcagccggtcagcgttactttttatatgccgatgaaggtctgattgccgaatacgacgac
gcaggcctggagcagctgcgtattggttaccggcccggcactctctggggcacccaacct
gttttcctttatggggaacatggggcagggggtaaaaaatacgcttacttccataacgat
cagttgggcacccctatcaagctgactgacgccagtggccatatcgtctgggacacaaag
ttcgatgcctttggcaatgcaatattggccagtagcaatgaagtagttaacccgctgcgc
ttccctggccaatatttcgatgccgaaactggcctgcattacaactggcgtcgttattac
gaccccaccagcggccgctatattacccctgacccaatagatttggccggtggcccaaac
ctatacacctatgtggatggtgaccccataaaccgcatagatcccaatggtgaatgtggt
gtgtttggggtgttgggaggacttgctactgagtatgcagcatctaagctgaccggtagc
tgttttagctatggctggggggacgccataggagatgccctttgcgtagggcggctattt
aaactcgctaaactgggtaaaaaagtaccttgtttgggtaacagctttaccggtgatacc
caggtttataccgaaaccggcatgcgccccatcagcgatatcaaggttggtgagcgggtc
tggtcctacaccgagtggaacggacaggagcaattcgagcccgtcgaagaggtaatcagg
aacaccagggaatacctgctggttaccctctccttagagtccgatgagaccatagtcgcg
accaatcaacaccccttttatattctcggcaaggggtgggtcgaagccgaagacttgcaa
cagggcgacccgctttacctcagcgataagcgcaccctgcatatccgcgctatcactaca
gaatttcgcaccgaaaccgtatacaaccttagcgttgcaaacgccaataccttttttgtc
ggcaaggacaaggtattagttcacaacgctaaaaaaggctgtaaatttgacgcgaaacct
tgtccgaaagccggtaagcctcgagactcaaaaggcagatttacaacaggggcaggtggt
aattctgaagatacagaaataggacagttagctcatgaagagttcaaggcaaaagcaaaa
gcaagaggatggctaactgataaaagagtggaatatggtgatggctcatatggcatacct
gatgctataacgcaagatggtcgtcctatagaacttaagccagatactccttctggtcgt
gctaaggggaggcgccagctgaaaaaatacgagaaagctttaggtaaaaaaggtcgagta
gtctattacgaccctaaaaacttcagaggtcccaaatgttaa
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