Shewanella khirikhana: STH12_04021
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Entry
STH12_04021 CDS
T06711
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_04021 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_04021 (recQ)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_04021 (recQ)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STH12_04021 (recQ)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STH12_04021 (recQ)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
STH12_04021 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
HEM4
Motif
Other DBs
NCBI-ProteinID:
AZQ13055
UniProt:
A0ABN5U1K4
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All DBs
Position
4553466..4555295
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AA seq
609 aa
AA seq
DB search
MEPASLSQTPDPLSHCLQQVFGYRDFRPGQRDVMERVCQGEDALVIMPTGGGKSLCYQVP
ALVLPGVTLVVSPLISLMKDQVDSLSQSGVSAAYLNSSQPREVAIEVLRQLRFGELKLLY
VSPERLLQGDFLNRLDDLHISLFAVDEAHCISEWGHDFRPEYSALGQLKQRFPHVPVMAL
TATADEATRVSICERLYINPFRHLASFDRPNIRYTVVEKLNAANQLRQFIQSRKGASGIV
YCSSRRRVDEVAARLRQQGFYAEAYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGIN
KSNVRFVVHYDIPKSIESYYQETGRGGRDCLDAEALLLFDPADIGRVKHHIEQLEPGAQQ
QVEYHKLASMAAFAEAQTCRRQVLLHYFGEAASEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRLEQRFGINHLIEVLRGSRAANVVERGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDITRGSSIRLNPAARPVLKGEVALMLAEPRLNISVSESPRRRNNARAPVNYDRRLFA
RLKNLRRTIAEEHDLPPYLVFNDATLAEMAWMLPKSEAELLAVNGVGERKLAKFGDAFLD
EIAAYISND
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagcttctctcagtcaaaccccggatcccctgagccactgcctgcaacaggtg
tttggttatcgggatttccgccccggtcaacgggacgtgatggagcgggtctgtcagggc
gaagatgcactggtgatcatgcccaccggtggcggcaaaagcctgtgctatcaggtgccg
gctctggtactcccaggggtgacgctggtagtttctcccttgatttcgttgatgaaagat
caggtcgacagcctgagtcagtccggggtctcggcggcatatctcaactcatcccagcca
cgcgaagtggctattgaagtgctccggcagctcaggtttggtgagctgaaactgctgtat
gtgtcgcctgagcggttgctgcagggggattttctcaaccgtcttgatgatctgcacatc
agcctgtttgccgttgacgaagcccattgcatcagtgaatggggtcatgacttccggccc
gaatactcggcgcttggacagctcaaacagcgtttcccacatgtgcccgtgatggcactg
acggccactgccgatgaagcgacccgtgtcagcatttgtgaacggctgtacatcaatcca
tttcgtcacctagccagtttcgaccggcccaatatccgttacacggtggtggagaagctg
aatgctgccaatcagctgcggcagtttatccagtcgcgcaagggcgccagtggcattgtc
tattgcagcagccgcaggcgggtcgatgaggtggcggcgcggcttcgtcagcagggcttc
tacgccgaggcataccatgccggtatgactcaggatgagcgcgccagcgtgcaggacagg
ttcctcaaagaccaaatcgatgtggttgtagccacagttgcctttggtatggggattaac
aaatccaacgtgcgttttgtggtgcactacgacattcccaaaagcatagagtcatactat
caggaaaccggacgcggtggccgggattgtctggatgctgaggcgctgctgctgtttgac
cctgccgatattgggcgggtgaaacaccatattgagcagttggagccgggggcgcagcaa
caagttgagtaccataagcttgcgtccatggcggcctttgccgaggcgcagacctgtcgt
cgacaggtgctgctgcactattttggcgaagcggcgagtgagccctgtggtaactgtgat
atctgcttggacccgcctaaaagatacaatggcactgaagacgcccagaaggttctatct
tgtatatacaggctggaacagcgctttggtatcaatcacttaatcgaagtgctgcggggc
tctagggcggcaaatgtggttgaacgtggccacgacaaactctcgacctggggaattggc
aaggacaagagccacgaatattggctgagtgttattcgtcagcttattcacctggggctg
gccagtcaggatatcacccgaggctcttctattcgccttaatcctgccgcaagacctgtg
ctgaaaggagaagtggcactgatgctggctgagccgcgactgaatatcagtgtgagcgaa
tcacctcgccgcagaaataatgccagggcgccggtgaactatgaccgtcgtctgtttgcc
cggctcaagaatttgcgccgtaccatagccgaagagcatgatctgccgccgtatctggta
ttcaacgatgcgaccctggccgaaatggcctggatgttgcccaagtcggaagccgagttg
ctggcggtgaacggcgtgggtgagcgcaagctggcaaagttcggcgatgcctttttggat
gagattgccgcttatatcagtaacgactga
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