Shewanella khirikhana: STH12_04082
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Entry
STH12_04082 CDS
T06711
Symbol
bspRIM_2
Name
(GenBank) Modification methylase BspRI
KO
K00558
DNA (cytosine-5)-methyltransferase 1 [EC:
2.1.1.37
]
Organism
skh
Shewanella khirikhana
Pathway
skh00270
Cysteine and methionine metabolism
skh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09105 Amino acid metabolism
00270 Cysteine and methionine metabolism
STH12_04082 (bspRIM_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
skh03000
]
STH12_04082 (bspRIM_2)
03032 DNA replication proteins [BR:
skh03032
]
STH12_04082 (bspRIM_2)
03036 Chromosome and associated proteins [BR:
skh03036
]
STH12_04082 (bspRIM_2)
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
skh02048
]
STH12_04082 (bspRIM_2)
Enzymes [BR:
skh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.37 DNA (cytosine-5-)-methyltransferase
STH12_04082 (bspRIM_2)
Transcription factors [BR:
skh03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
STH12_04082 (bspRIM_2)
DNA replication proteins [BR:
skh03032
]
Eukaryotic type
DNA Replication Termination Factors
DNA methylation enzymes
STH12_04082 (bspRIM_2)
Chromosome and associated proteins [BR:
skh03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
STH12_04082 (bspRIM_2)
Prokaryotic defense system [BR:
skh02048
]
Restriction and modification system (R-M system)
Type II R-M system
DNA methyltransferases
STH12_04082 (bspRIM_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_methylase
HTH_17
RWP-RK
Sigma70_r4
HTH_28
HTH_Mga
Tn916-Xis
HTH_59
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
AZQ13108
LinkDB
All DBs
Position
complement(4631202..4632623)
Genome browser
AA seq
473 aa
AA seq
DB search
MSTEITIKEAAEQLNISEQRIRTLCRTNELKARKLGSSWVIDASSLRNYGLKSAHKVAED
HPVYKIDKKKPIALSFFSGAMGLDLGIEKAGFDVRLACEIDKFCRQTIALNRPNAALLTD
INEYSSSDIRQAAGLSDDDDIDLIMGGPPCQAFSTAGKRKGFNDDRGNVFLKYLELCLEL
KPKYFVIENVRGLLSCPMDHRPHDQRGPEFPDLKADELKGGALNFIINRLESSGYGFSFN
LYNSANFGTPQIRERVIIICSRDGKKPPFLIPTHSEDGSFGLPKWRTLKSCIKNIESHNH
LNFPEKRLQYYRLLKPGQNWKDLPIELQKEAMGKSFYSGGGKTGFLRRLAWDKPSPTLVT
HPAMPATDLAHPTEDRPISVEEYKRIQEFPDSWELAGPIIQQYKQVGNAVPLGMGLAVGQ
LILKLLNNVDIIALKGFKYSRYKNTSDAEWRDQFNKQIETFKDKSEQQELGFG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccgaaattaccattaaagaagcagctgaacaactaaatattagcgagcagcgg
atccgcaccctttgtagaaccaatgaactcaaggcaagaaagcttggtagttcgtgggta
attgatgcctctagcttaagaaactatggtctcaaatctgcccacaaagtagctgaagat
catcctgtttataaaattgacaaaaaaaagcccatagcattgagcttcttctcaggagcc
atgggacttgacctaggaatagaaaaggcaggttttgacgtccgtcttgcctgtgaaatt
gataaattttgcaggcaaacaattgctctgaataggcccaatgctgccttgctaaccgac
atcaacgaatattctagttcagatataagacaggccgcaggattgtcagatgacgatgat
atagatttgattatgggcggccctccatgccaagcatttagcaccgcaggaaagcgaaaa
ggcttcaatgacgacagagggaatgtgtttttaaaatatttagagctatgccttgaactg
aaaccgaaatattttgtaattgaaaatgttagggggcttttatcttgtcctatggatcat
agaccgcatgatcaaagaggtccggaattccccgacttaaaagcggatgaactaaaaggc
ggcgcgctaaattttataattaatagactcgaaagttccggatacggattttcatttaat
ttatataactctgctaattttggaacaccgcaaattagagagcgcgtaattatcatttgc
tctcgcgacggcaaaaaaccaccatttttgataccaacacactcagaagatggttcgttt
ggattgccgaaatggagaactttaaagtcgtgcattaaaaatattgaaagccacaatcac
cttaattttccagaaaagagattgcaatactatcgcctactcaaacctggtcagaattgg
aaagatttaccaatagagttacaaaaagaagctatgggaaaatcattttattccggtgga
ggaaaaacaggttttttaaggcggctagcgtgggataaaccgtccccaactttggtcact
catccagcaatgccagcaactgacctagctcacccaacagaagataggccaatatctgtt
gaggaatacaaaagaatacaagagtttccagatagctgggagctagctggaccgataatc
cagcaatataaacaagttggtaatgctgttcctttaggtatggggcttgctgtaggccag
cttattttaaagttactcaataatgttgatattattgctctcaaagggtttaaatactct
agatataaaaataccagtgatgcggagtggagagaccaattcaacaagcaaatagaaaca
tttaaggacaaatcagaacagcaagaattaggttttggttaa
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