Shewanella khirikhana: STH12_04083
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Entry
STH12_04083 CDS
T06711
Symbol
rhlE_5
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
skh
Shewanella khirikhana
Pathway
skh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STH12_04083 (rhlE_5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_04083 (rhlE_5)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STH12_04083 (rhlE_5)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STH12_04083 (rhlE_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_22
DUF2345
HEM4
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZQ13109
LinkDB
All DBs
Position
complement(4632802..4634220)
Genome browser
AA seq
472 aa
AA seq
DB search
MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVVLSGRNLLAAAQTGTGKTAAFGLPLI
ERLSQGKTERKKRVRAVILAPTRELVVQVADNLGAYAANLPLTVLAMYGGVDMQAQKQAL
IAGVDILVATPGRLKDMYHQRAVYFEEIQVMVLDEADRMLDMGFIEVINDLISRMPTNRQ
NLLFSATLSPRIRELAKTAVPDPVEIAIAKPSKKEISQWLVTVDKDAKSALLSHLIQTEQ
WQQALIFIETKHGAAKLVSQLEKRGIRAEAFHSGRSQASREQVLSEFKDGSLQYLVATGV
AARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCMIESRL
GHVIERRVIEGFEPKKPIPVSILDYKPKSQPKAQRSSQRKAQRSSQPSSQLNSQPVSQPK
ARPEKPRASEGGTAAKNPWAAAQRKKPANPQRGTSAARSGTPKGKDSGKPRG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcccgtctgggattagctcccgccattacttctgcacttgagtcgctgaac
tatcaacagcctaccgagatccagcaaaaggcaatcccggtagtcttaagtggccgcaat
ctgctggccgcagcgcaaaccgggacgggcaaaacggcggcatttgggctgccgctgatt
gagcgcttaagccagggtaagaccgagcggaaaaaacgggtacgggcggtgattctggcg
ccaacccgggagttggtggtgcaggtggctgacaatctcggcgcctacgcagcgaatttg
ccgctgaccgtgctggccatgtatggcggtgtggatatgcaggcccaaaagcaggcgctg
attgcgggcgtggatattctggtggcgacgccgggtcgactcaaagacatgtaccatcag
cgcgctgtgtattttgaagaaatccaggtgatggtgctggatgaagctgaccgcatgctg
gatatgggctttattgaggtcattaacgaccttatcagccgtatgcccacgaaccgccag
aatctgctgttttcggcgactttatcgccacggatccgcgaactggccaaaactgcggtg
ccggatccggttgaaattgccatcgccaagcccagcaaaaaagagatttcccagtggttg
gtgacggtcgacaaggacgccaagtcggcactgctgagccatcttatccaaactgaacaa
tggcagcaggcactgattttcattgaaaccaaacatggtgcagccaagttggtcagccag
cttgaaaagcgtggcatccgcgcagaagcctttcacagtggccgcagtcaggcgtcgcgc
gaacaggtgttgagtgaatttaaagacggcagcttgcagtatctggtcgccaccggcgtg
gccgcccgggggattgatgtcgataagcttgaacgggtggtgaactacgatctgccattc
ccgccggatgaatatattcaccgtatcggtcgtaccggccgtgcgggcatgacaggggaa
gcggtgtctttgctgtcaaaagatgatttcaagaatctgtgtatgattgaaagccgtctc
gggcatgtgattgagcggcgggtgattgagggatttgagcccaaaaagcctatccctgtg
tctattctcgactataagcccaagtctcagccaaaagctcagcgcagctctcagcgcaaa
gctcagcgcagctctcagcctagctctcaactcaactctcagcccgtctctcaaccaaaa
gctcgcccagaaaagccaagggcaagcgaaggcggcactgcagccaaaaacccttgggca
gcggcgcaacgaaaaaaacctgccaacccacagcgtggaaccagcgccgccagatcaggg
acgccaaagggcaaggattcaggcaagccacggggctaa
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