Shewanella khirikhana: STH12_04124
Help
Entry
STH12_04124 CDS
T06711
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
skh
Shewanella khirikhana
Pathway
skh03420
Nucleotide excision repair
skh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STH12_04124 (uvrD)
03430 Mismatch repair
STH12_04124 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_04124 (uvrD)
Enzymes [BR:
skh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STH12_04124 (uvrD)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STH12_04124 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
STH12_04124 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZQ13150
UniProt:
A0ABM7DX72
LinkDB
All DBs
Position
4680543..4682708
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSFLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAV
TFTNKAAAEMRERVEKIVGHNTGRMWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQ
RLLKRILKSLNLDEKQYPPRLVAGYINGKKDQGLRPAHIDAGPFPMEQKLLELYRIYQDS
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGNS
GHVMIVGDDDQSIYGWRGAQVENLHRFLKDFPSAQTIRLEQNYRSTGNILKASNELIANN
PDRMGKELWTEDKDGEPISLYCAFNEMDEARFIVGRISDWQDKGGMLGECAILYRSNAQS
RVLEEALLHKGLPYRIYGGLRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIGE
RTMDILRSTARKEQLTLWQTSLRLMEEKVLSGRAANAVKGFLDLIVQLRNDTDELPLYRV
ADHVIQHSGLKAMYEAEKGENAQARVENLEELVTAARSFEMPEELDDMPELDAFLSHAAL
EAGEGQADAHTDAVQLMTLHSAKGLEFPLVFMAGVEEGIFPSKLALEEGDRLEEERRLCY
VGMTRAMDKLYITYAESRRIYGREDYARPSRFIREIPPQYVEEIRLKAQVSAPMAANRFA
HAQQSFNDSGLRVSGRVRHFKFGDGTVTNYEGSGPQARVQVHFDDFGSKWLVVSYAKLEN
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttttttactggatggcctgaacgataaacagcgtgaagcggtggccgcg
ccccaatccagcatgctggtgttggccggtgcaggcagtggcaagacccgggtattgacc
cacaggattgcctggctgttgcaggttgaaaaccagagtccttattccattctcgctgtg
acctttaccaacaaggccgccgccgaaatgcgtgagcgggtggaaaaaattgtcggtcac
aacactggccgtatgtggattggtactttccacggcctggctcaccgcctgctgcgtacc
cactggcaggacgccggattgccacaaagtttccagatcatggattccgacgatcagcag
cggctgcttaagcgcatcctcaagagcctgaatctggatgaaaaacagtatccgcccagg
ctggtggcgggctacatcaacggcaaaaaagatcagggcttaagacccgctcatatcgac
gccggtcccttcccgatggagcaaaagctgctggagctgtatcgcatctatcaggacagc
tgtgacagagccggtttggtggattttgccgaaatcctgctgcgcgcccacgaactctgg
ctcaataagccccatctgctggcccattatcaggaccgcttccgccatattctggtggac
gagtttcaggataccaacgccattcaatacgcctggatccgggtgctggcgggcaacagc
ggccatgtgatgattgtaggggacgacgatcagtcgatttacggctggcgtggcgcccag
gtggaaaacctgcatcgcttcttaaaagatttccccagcgcccagactatacgtcttgag
caaaactaccgctccaccggcaatatcctcaaagcctccaacgagttgattgccaataac
cccgatcgtatgggcaaggagctgtggaccgaagacaaagacggcgagccgatttccctt
tactgcgccttcaacgaaatggatgaggcgcgctttattgttggccgcatcagtgactgg
caggacaagggcggcatgctgggcgagtgcgccattctctaccgctccaatgcccagtca
cgggtattggaagaagccttgttgcacaaaggcttaccttatcgtatctatggcggcctg
cgcttcttcgagcgtcaggaaatcaaagacgccatgggctatctgcggcttatctccaac
cgcgatgacgatgctgcgtttgagcgtgtggtcaacacccccgcccgtggcataggcgag
cgcaccatggatatcttgcgctcaaccgcccgtaaagagcagctgaccctgtggcagacc
agtctgcgactgatggaagaaaaggtgttgtctggccgcgccgccaatgcggtgaagggc
tttttggatttgatagtgcagctgcgaaacgacaccgacgagctgccgctctaccgggtg
gctgaccatgttattcagcactcgggccttaaggctatgtacgaggctgaaaagggtgaa
aatgcccaggcgcgggtagaaaaccttgaagaattggtcactgccgcccgcagttttgag
atgcccgaagagctggatgacatgccagagctggacgccttcctgtcccatgcggcgctg
gaagccggtgaaggtcaggccgatgcccatacggatgcggtgcaactgatgacgctgcac
tccgccaagggcctggagttcccgctggtgtttatggccggggtggaagaagggattttc
ccaagcaaactggcgctggaagaaggcgacaggctcgaagaagagcggcgcctgtgttac
gtgggtatgacccgcgccatggataagctctacatcacctacgccgagtcgcgtcgtatt
tatggccgcgaagattacgcccgtccctcgcgctttatccgcgaaattccaccgcagtat
gtggaggaaattcgcctcaaggctcaggtgtcggcgccgatggcggccaaccgttttgcc
catgctcagcagtcgttcaacgattcgggcctcagagtgagcggccgggtcagacacttc
aagtttggcgacggcactgtcaccaactacgaaggcagcggcccccaagcgcgggtacag
gtgcatttcgatgacttcggcagcaagtggctggtggtcagttacgccaagctggaaaat
atctga
DBGET
integrated database retrieval system
