Shewanella khirikhana: STH12_04174
Help
Entry
STH12_04174 CDS
T06711
Symbol
csrD_2
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skh03019
]
STH12_04174 (csrD_2)
Messenger RNA biogenesis [BR:
skh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STH12_04174 (csrD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
AZQ13200
LinkDB
All DBs
Position
4735841..4737748
Genome browser
AA seq
635 aa
AA seq
DB search
MQLTRMLTKKLISFWMMSLAAVAFVFLLSALMSFVQLTYRFQQQKVGELETMLINHYQNE
STWELDSWLPPMLLAYNAISFRLTENDELVFEYQGNIGFEQKVLYERVLKDNEALKMRLE
LPRPFSSHELGWREIMILLVGIAAVGGFVRFGYLWFSAELEGIEALAQRSKLILDGKLEQ
AAKTPGNGKPRLINRALTRLLAELADAHKERARFDKFIRSNTFLDPQTRIGNRLFLQNRL
NALSGDHGMMAPGVLYLLEMEDLDILQQELGDEPVHELLHGTINAINLVLQTQANSIFAR
RSHNQLAIVVPQISLAEADALADKLLKICLAQPLPKVDEADNFFHLGGAYFKEGDAPEQL
LDEADMALRAAQLQGTSGWFMYDKGAVDQEFAKGSVRWRAFLENALVHRQFVAFAQPVSE
GDGTRHHYEIFTRVKDPMGSLVRATLFIPMAVKCGLMPQIERQVVERTLFELMADPAAQN
RHFSINLSLDSLTSRAFVRWLQTTLLEYRHLASRLVFEVTEDVVIKHREKLEPRLNMLRK
MGARICVDHVGQQVVSTQYIKELGFNFIKLHRSVVRQIDLRPENQLFVRSLIGSLYRTEV
RVFAEGVGSFEEWQTLQILGVSAGQGSYFGDPQQT
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcacgcgcatgctgaccaaaaaactcatcagcttctggatgatgtcgctggcg
gcagttgcctttgtctttttgctcagcgccctgatgagcttcgtgcagcttacctaccgt
tttcagcagcaaaaagtgggtgagctggaaaccatgctcatcaatcactaccaaaatgaa
agcacctgggagctggactcctggctgcctcctatgctgctcgcctacaacgccatcagt
tttcgcctgacagaaaacgatgagttggtctttgaatatcaaggtaatatcggctttgag
caaaaggtactctacgagcgggtgctgaaagacaacgaggcgctgaagatgcgtctcgaa
ttgcccaggcccttctccagccacgagcttggctggcgcgaaatcatgatcctgctggtg
ggcattgccgccgttggtggctttgtccgctttggctatttatggttttcggccgagctt
gaaggcatagaagcactggcgcagcgcagtaagctcattctcgatggcaagctggaacag
gcggccaagactccgggcaacggcaagcccagactgattaaccgcgccctgacgcggctg
ctggccgaactggcggacgcccacaaggagcgcgccagattcgacaaattcattcgctcc
aataccttcctcgacccccaaacccgcatagggaaccggctgtttttgcaaaacaggctc
aatgcgctctcgggggatcacggcatgatggcccccggggtcttgtatctgctggaaatg
gaagatctggacattctgcagcaagagcttggcgatgagccggtgcatgaactgctgcac
ggcactatcaatgccatcaatctggtgctgcaaacccaggccaacagtatctttgcccgt
cgctcccataatcagctggcgatagtggtgccgcaaatttccctcgccgaagccgatgcg
ctggccgacaaactgctgaaaatctgtctggcgcagccgctgcccaaggtggatgaggcc
gataactttttccatcttggcggcgcttattttaaagaaggcgacgcgccggagcagttg
ctggatgaggccgatatggcgctcagagcggcgcagctacagggtaccagtggctggttt
atgtacgacaaaggcgctgtagatcaggagtttgccaagggctcggtgcgctggcgcgcg
tttctggaaaacgcgcttgtgcatcgccagtttgtggcctttgcccagccggtttccgaa
ggtgatggcacccgtcatcattatgaaatctttaccagggtaaaagatcccatgggcagt
ctggtgagagcgaccctgtttattcccatggcggtgaaatgcggtttgatgccgcaaatc
gagcgtcaggtggtcgagcgcaccctgtttgaactgatggccgaccccgccgcgcaaaac
cgccacttcagcattaacctgagtctggactccctcaccagtcgtgcgtttgtgcgctgg
ctgcaaaccaccctgctggaatatcgccatctggcttcacggttggtgtttgaagtgacc
gaagatgtggtgattaagcatagggaaaagctcgagccgcggctcaatatgctgcgcaaa
atgggcgccaggatctgtgttgatcatgtgggtcagcaggtagtgagcacccagtacatc
aaggaactggggttcaatttcatcaaactgcatcgctctgtggtgcgtcaaatcgattta
aggccagaaaatcagctgtttgtccgcagcttgataggcagtctctaccgcaccgaggta
cgggtatttgccgaaggggttgggtcgttcgaagagtggcaaaccctgcaaattttgggt
gtaagtgctggtcaaggcagttattttggcgatccacagcagacttga
DBGET
integrated database retrieval system
