Shewanella khirikhana: STH12_04270
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Entry
STH12_04270 CDS
T06711
Symbol
stpA
Name
(GenBank) DNA-binding protein StpA
KO
K03746
DNA-binding protein H-NS
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
skh03036
]
STH12_04270 (stpA)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_04270 (stpA)
Chromosome and associated proteins [BR:
skh03036
]
Prokaryotic type
Nucleoid associated proteins
HNS (histone-like nucleoid structuring protein)
STH12_04270 (stpA)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
STH12_04270 (stpA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Histone_HNS_N
Histone_HNS
SPT6_acidic
CR6_interact
NTF2_5
Utp12
Motif
Other DBs
NCBI-ProteinID:
AZQ13296
UniProt:
A0ABM7DXI9
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All DBs
Position
pSTH1:complement(27534..27926)
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AA seq
130 aa
AA seq
DB search
MNEFLEMLTHGRRLKAAVKDLPVEQLCKLLAKLETIIADREAEAEEELKANAERNARIEA
IRKQMDEIGLSVEDLGLITAKSASKKRAPRPAKYKIVVDGQEVIWTGQGRTPTAFRNAVE
GGAALEDFLI
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtttcttgaaatgttaacacacgggcgccgtttgaaagcagcagtcaaagat
ctaccagttgagcagttgtgtaaattgcttgcgaagttagagacaattattgctgatcgt
gaagccgaggctgaggaagagttgaaagccaacgcggaacgaaacgctagaattgaagct
attcgtaagcaaatggatgaaattgggctgtcagtagaggatttaggtcttataacagct
aaatccgcaagtaagaagcgagcacctcgaccagctaaatacaaaatcgtcgtagatggc
caggaagttatctggacaggtcaggggcgtacacctacggcatttcggaatgccgtagaa
ggcggtgcagctttggaagatttcctaatttaa
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