Streptococcus koreensis: D7D50_01160
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Entry
D7D50_01160 CDS
T06405
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ski
Streptococcus koreensis
Pathway
ski03420
Nucleotide excision repair
ski03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ski00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D50_01160
03430 Mismatch repair
D7D50_01160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ski03400
]
D7D50_01160
Enzymes [BR:
ski01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D50_01160
DNA repair and recombination proteins [BR:
ski03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D50_01160
MMR (mismatch excision repair)
Other MMR factors
D7D50_01160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
UvrD_C_2
Dna2
AAA_30
DUF3799
DUF2800
AAA_11
AAA_14
DEAD
NES_C_h
Motif
Other DBs
NCBI-ProteinID:
AYF93331
UniProt:
A0ABM6Z7P5
LinkDB
All DBs
Position
complement(209823..213794)
Genome browser
AA seq
1323 aa
AA seq
DB search
MVMKNFKDIYEQEYQKLNSQQKRAVDTVEGPVMVIAGPGTGKTQILSRRVANILTNYHTN
PEEIVCLTYTEAGASEMLDRLEGLIGEEGRNVRVSTIHSFCSELILENSDLFGEEPKVIT
TAAKYEILKDIIDEHVTEESPFYKNSGERYSFKEQLLDLFTKMKREKLDKTILEKEIDEY
FKMIDLSIPGDELYSKFKYARKYKDKKAGDYKEEPLKKLQENMEKLLAGVEIVEKYSDDI
SDHNYFDFDDMILWTIEKLEEDDAFQRSVSEGIKYLFVDEFQDTSVIQNKLVDLLVKGKK
NPNIFVVGDDDQSIYRFQGVSADNIQIFDKKYKPTKIVLEENYRSSQAIIDASRQLISHN
PREEKVLVAAGDNKNYDYQLPILKSYSNAKDEMYGVLSEIEELIQSGVSPQEIGVIYGRN
SYGEEFAKILRDNGIFVQMKENQDLFKEPIFKKIVAILKYLCQPSRDIRALRNIVYFDFF
EVEPSEIAKIRNLRKDEKISIPSIAEIDKKLEVIRKKVSRSENYLSPMYVLGDILKTLGI
DEYIMKSKEKYHLVSVLNELYKLMSTECLLHPKLTVKGFLNQLSSLQEMKISLPIEEISG
SPSNCVQLMTAHGSKGLEFEHVFMMKCNDGNKGGKWPGGENNSGRFSYPPSLNGKVENES
QLKEEENRRLFYVAMTRAKKVLHLSYSDDSAKTHFINEFENFIDPVEVTESFEECQSIDE
IVIPKFSDDIPSEILGELSLSVSTLNAFLKCPLSFYFNKGLKLPSETNEAMVFGSIIHEL
LEKIYISIDDSQSSELTVKTVLSLEEALELFETIFDEKSYQLSSDRIKKDAYARGRNIIE
NLYKKDGYLKDGVIAVEQHIKGIKLGDISNTKVDLSEVSDIELNGKIDKIECEEGVIRLI
DYKTGKAKNAVDKLVPPGEKEPLGGDYWRQAVFYYVLLTNAGIDISDKEILVKYVFVEDS
TNEDGFSETNDIRITRKEVDIVLSQIKDAVMRLKQGDFNCGCGLVKKDGENFACDYCLKA
LANVAPKFDNTKALEVATYQQVRSNYKSLSVSKLNHFLDCPKSIYFDDILQLSQPAGLSA
GSKENSAKVTTKHAPTGPVFGTVIHETMEQIYKEDLQLEEAIKYYDNSLSLHQEEIIDTM
SVEELKEYGHRLLSNLFEHYIPSSLKGEHVHLEKELRVKLGDKYLINGIIDKLEFDNDLI
RVVDYKTGSAQRGVEELEVGHDYWRQAVFYNLLLENSSEIDTTGKKIQTQYIFLDDDGAK
EGYSTHTVKVTKQDLDLVFAQIQEFWDKVNVADFTAGCGKKDCDYCRLGEFVDFQLLKEN
VKV
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggtaatgaagaattttaaggatatatatgaacaagaatatcaaaagttgaattcacaa
caaaaaagagcagttgatactgtagaagggcctgtgatggttattgctggccctggtaca
ggtaaaactcagattctttctcgtcgagttgccaatattttaacaaattatcatacaaat
ccagaagagattgtctgtttaacatatacagaggcaggtgcatctgaaatgttggatcgt
ttggaaggattgattggtgaagaaggacgtaacgttagagtatcgactatccactctttt
tgtagcgaattgatactagaaaactctgatttatttggtgaagagcctaaagtaattact
actgcagctaagtatgaaattctcaaagatattatagatgagcatgttacggaagagagt
cctttttataaaaactctggagaacgttattcttttaaagagcaactattagaccttttt
acaaaaatgaaacgtgaaaaactggataaaactattttagaaaaagagatagatgaatac
tttaaaatgattgatttatctatacctggagatgagttgtatagtaaattcaagtatgct
agaaagtataaagataagaaagctggagattataaagaagaaccattaaaaaaattacaa
gaaaacatggaaaagttacttgctggagttgaaattgttgaaaagtatagcgatgatatt
agcgatcacaattattttgactttgatgatatgattctatggaccattgaaaagttggag
gaagatgatgctttccaaagaagtgtctctgaaggtataaaatatttgtttgtagatgaa
tttcaggatacttcagttattcagaacaaactcgtagatttattagtaaaagggaagaag
aatccaaatatttttgttgtaggagatgatgatcaaagtatttatcgttttcaaggagtg
agtgcagataatattcaaatttttgataagaagtataaacctacgaaaatagttcttgaa
gaaaattatcgttcatcacaagctatcattgatgcttcgagacaactaatcagtcataat
ccaagagaagagaaagttcttgttgcagctggcgataataaaaattatgattatcaattg
ccaatcttgaaatcatattcaaatgcaaaagatgaaatgtatggtgtactgagtgagatt
gaagagttgattcagtcgggtgtatctcctcaggaaattggagtcatctatggaagaaat
tcctatggagaagagtttgcgaagattcttcgtgataatggtattttcgttcaaatgaaa
gaaaatcaggatttattcaaagaacctatcttcaaaaaaatagtagctattttaaaatat
ctttgtcaaccatcaagagatatcagagcacttcgcaatatcgtatattttgattttttt
gaggtggaaccctcagaaatcgcaaaaatacgaaatctcaggaaggatgaaaaaatttct
attccttccatagcagaaattgataaaaaactagaagtgattcgaaagaaagttagtaga
tcagagaattacttatctcctatgtatgtcctaggtgatatattgaaaactctaggaatt
gacgaatatattatgaaatcaaaagaaaaatatcatttggtttcagttctaaatgaactt
tataagttaatgtcaacagaatgtctgctccaccctaaattgactgtaaaaggatttttg
aatcaattatcgtccttacaagaaatgaagattagtctaccaattgaagaaatttcgggt
tctccaagtaactgtgttcaattaatgacagcccatggttctaaaggtctagagtttgaa
catgtatttatgatgaaatgtaatgatggaaataaaggtggaaaatggccaggaggtgaa
aataattcgggtagattctcttatccaccaagtttaaatggaaaagttgagaatgaatct
caactaaaagaagaggagaatcgtcgcctattttatgttgcaatgactcgagcaaagaag
gttctccatctctcctattctgatgattcggctaaaacccactttattaatgaatttgag
aattttattgatccagtggaagtgacagaatctttcgaggaatgtcagtctatagacgaa
atagtaataccaaagttttctgacgatattccgagtgaaattttaggtgaattaagttta
agtgttagtacattaaatgcttttcttaaatgtcctttgagtttttatttcaataaggga
ttaaaattaccatctgaaacaaacgaagctatggtatttggtagcattattcacgaatta
ttagaaaaaatatatatttctatagatgattcgcaaagttcagaactaacagtaaaaaca
gttctttctttagaagaagctttagaattgtttgagacaatctttgatgaaaaatcttat
caattatcttcagatagaataaagaaggatgcttatgctagaggaagaaatattattgaa
aatctctataagaaagatggctatctcaaagatggcgtaattgcagtcgagcagcatatt
aaaggaatcaagctaggtgatatttcgaacaccaaagttgatctatcagaagtatctgat
attgagttaaatggaaaaattgataaaattgagtgcgaagaaggtgttatacgattaatt
gactacaaaacaggaaaagccaaaaatgctgtagataaattagtgccaccgggtgaaaaa
gaacctcttggtggggattactggcgccaggctgtattctattatgtcctcctcacaaac
gccggtatcgatatttctgacaaagaaatactggttaaatatgtttttgttgaggattca
actaatgaggatggcttctctgaaactaatgatatacgaattactcgaaaggaagtagat
atagtactcagtcaaattaaagatgctgttatgaggttaaaacaaggcgatttcaattgt
ggctgtggattggtgaaaaaagatggagagaattttgcttgcgactactgcctcaaagca
ttagcaaacgtagctcctaaatttgataataccaaagccttagaggttgcgacctatcaa
caagtccgatccaactataagagtttaagtgttagcaagttaaatcatttcttagactgt
ccgaagagtatctattttgatgatattttacagttatctcaaccagctggattatcagca
ggatcaaaagaaaattctgcaaaagtaacaactaaacatgccccaactggtcccgtgttt
ggtactgtaattcatgaaactatggaacaaatttataaagaagatttacaattagaggaa
gctattaaatattacgataattcattgagccttcatcaagaggaaatcatcgatacaatg
tccgtagaagaattaaaagaatatggtcatcgcttactgtccaatctttttgaacattat
attccgagcagtttaaaaggggagcatgttcacttagagaaagaacttcgtgttaaattg
ggggataaatacttaatcaatgggattatagataagttagaatttgacaatgatcttatt
cgagtagtagattataagacgggttctgctcagagaggtgttgaagaactagaagttgga
catgattattggcgtcaagcagtattctataatcttttattagaaaattcttcagaaata
gatactacaggtaagaaaattcaaactcagtatatttttctagatgatgatggcgcaaag
gaaggctactcgacccatactgtaaaagttacaaaacaagatctagatttagttttcgct
caaattcaagaattctgggataaagtgaatgtagccgattttactgctggttgtggtaaa
aaagattgtgattattgccgtttaggtgaatttgtagattttcaattgttgaaagaaaat
gtaaaagtataa
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