Streptococcus koreensis: D7D50_02085
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Entry
D7D50_02085 CDS
T06405
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ski
Streptococcus koreensis
Pathway
ski03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ski00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D7D50_02085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ski03021
]
D7D50_02085 (rpoC)
03400 DNA repair and recombination proteins [BR:
ski03400
]
D7D50_02085 (rpoC)
Enzymes [BR:
ski01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D7D50_02085 (rpoC)
Transcription machinery [BR:
ski03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D7D50_02085 (rpoC)
DNA repair and recombination proteins [BR:
ski03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D7D50_02085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AYF93496
UniProt:
A0ABM6Z7X3
LinkDB
All DBs
Position
complement(389997..393650)
Genome browser
AA seq
1217 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGPGSFVAKMGAEAIQDLL
KQVDLEAEIAVLKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMALRNGYVHLHTRVGI
ATDSLNKPWTEAQQHKILLTTVGKILFNDIMPAELPYLQEPNNANLTEGVPAKYFLEPGQ
DVKVAIEQLELNVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLVDNQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEMIEPLE
ERLTGRYTKKSVKHPETGAVIVGPDTLISEDLAREIVNAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDASTRTKKVFVRGATGEGEYVVPYTARMKVEVGDQV
SRGAALTEGSIQPKRLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDITDFTDANRDVVISGGVPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNEVEIIEEVP
VTEEATETVESIVVEEN
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagcaaggtc
cgttcatggtcttatggagaggtcaagaaacctgaaacaatcaactaccgtacattgaaa
ccagaacgtgaaggtctctttgatgaagtcatctttggtcctacaaaagactgggaatgt
gcgtgtggaaaatacaaacgaatccgttacaaagggattgtttgtgaccgctgtggtgtg
gaagtaacacgtgccaaggttcgtcgtgaacgaatggggcatatcgagttgaaagctcct
gtatcacacatctggtacttcaaaggaatcccttctcgtatgggattgaccttggacatg
agtcctcgtgcccttgaagaagtcatctacttcgcagcttacgtggttatcgatccaaaa
gatacaccgcttgagcacaaatccatcatgacagaacgcgaataccgtgaacgcttgcgt
gaatacggaccaggttcctttgttgccaagatgggggcagaagcgatccaagacctcttg
aaacaagtggatttggaagctgaaattgctgtcttgaaagaagaattgaagactgcaact
ggtcaaaaacgtgtgaaggctgttcgccgtttggatgtcttagatgccttctacaaatct
ggaaacaaaccagaatggatggttctcaacatccttcctgttattccaccagatcttcgt
ccgatggtccaattggatggtggccgttttgctgcctctgacttgaacgacctttaccgt
cgtgtgatcaaccggaacaaccgtttggctcgtttgcttgagttgaatgctcctggtatc
attgtgcaaaacgaaaaacggatgcttcaagaagcggttgacgctttgattgacaatggc
cgtcgaggtcgtccgatcacaggaccaggtagccgtccacttaaatcattgagccacatg
ctcaaagggaaacaaggacgcttccgtcaaaacttgctcgggaaacgggtagacttctca
ggacgttccgttatcgccgttggtccaacccttaagatgtaccaatgtggtgtgccacgt
gaaatggccatcgagcttttcaaaccatttgtcatgcgtgaaatcgttgcgcgtgatatc
gtgcaaaacgtcaaagcagctaaacgcttggtggaacgtggcgatgagcgtatctgggat
atcctagaagaagtcatcaaagaacacccagttctcttgaaccgcgcaccgaccctccac
cgcctggggatccaagccttcgagccagtcttgattgacgggaaagctcttcgcttgcac
ccacttgtctgtgaagcctacaacgccgactttgacggtgaccaaatggccatccacgta
ccgctttcagaagaagcccaagcagaagcccgtatcttgatgctggctgctgagcacatc
ttgaacccgaaagatggtaaaccagttgttaccccatctcaggatatggtcttggggaac
tactaccttactatggaagaagctggtcgtgaaggcgaaggaatggtcttcaaagaccgt
gatgaagcggtcatggcccttcgcaatggttatgttcacttgcatacacgtgtcggaatt
gcgacggatagcttgaacaaaccatggacagaagctcaacaacacaagattctcttgaca
acggttggtaagattctctttaacgatatcatgcctgcagaacttccatacctccaagag
ccaaataatgccaacttgacagaaggtgttccagctaagtacttcttggagcctggtcaa
gatgtcaaagtggcgattgagcaattggaattaaacgttccattcaagaagaaaaatctt
ggaaatatcatcgcggaaatcttcaaacgcttccgtacaacagaaacatctgctttcttg
gaccgtttgaaagacttaggttaccaccactcaacccttgctggtttgacagtggggatt
gccgatattccagttgttgaagataaggctgaaatcattgaagaatctcacaaacgtgta
gaacaaatcaccaaacagttccgtcgcgggatgattacagatgatgagcgttacaatgcc
gttacagctgaatggcgtgcagcccgtgagaaattggaaaaacgcttggtagataaccaa
gatccgaagaacccaatcgttatgatgatggactctggagctcgtggtaacatctcaaac
ttctcacagcttgccggtatgcgtggtttgatggctgctccaaacggacggattatggaa
ttgccgatcctttcaaacttccgcgaaggtttgtcagtacttgaaatgttcttctctact
cacggtgctcgtaaagggatgaccgatacggccctcaagacagccgactcaggttacttg
acacgtcgtttggttgacgttgcccaagacgtcattatccgtgaggatgactgtggaact
gaccgtggactcgtgatccgtgcgattaccgatggcaaagaaatgattgaaccattggaa
gagcgtttaacaggtcgttatacgaagaaatctgtcaaacatcctgaaacaggtgcagtc
attgttggtccagatactttgatttcagaagacctagcacgtgaaattgtcaatgctggt
gttgaagaagtcactatccgttctgtctttacatgtaacacccgccatggtgtctgccgt
cactgttacggtatcaacttggcgactggtgatgcagttgaagttggtgaagcagtcgga
accatcgcagcccaatctatcggggaacctggtacacagcttacaatgcgtaccttccac
acgggtggggttgcctcaaataccgatatcacgcaaggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatccgaagggggaagcggtcatcactgaggtcaaaggggaagtcaca
gccattgaagaagatgcttctacacgtaccaagaaagtctttgttcgtggtgcgactggt
gagggagaatacgttgtcccttacacagcccgcatgaaagtcgaagtgggagatcaagtc
tctcgtggtgcagcattgacagaaggttctatccaaccaaaacgtctccttgccgttcgt
gatgtcttgtctgttgaaacttacctccttgcggaagtacaaaaagtataccgtagccaa
ggggtagaaatcggcgacaaacacatcgaggtaatggtgcgtcaaatgatccgtaaggtt
cgtgttatggatccaggagatacagaccttctcatgggtaccctcatggatattacagac
tttacagatgctaaccgtgatgtggtcatttccggtggggttcctgcaacggctcgtcca
gtccttatgggtatcaccaaggcctctcttgaaaccaatagtttcttgtcagcggcttcc
ttccaggaaacaactcgtgtcctcactgacgcagcgattcgcggtaagaaagaccatctc
cttggactcaaggaaaatgttatcattggtaagattattcctgctggtacaggtatggct
cgttatcgtaacttggaaccacaagcagtcaatgaagtcgaaattatcgaagaagttcct
gttacagaagaagcaactgaaactgttgaatcaattgtagtggaagaaaattaa
DBGET
integrated database retrieval system
