Streptococcus koreensis: D7D50_04180
Help
Entry
D7D50_04180 CDS
T06405
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ski
Streptococcus koreensis
Pathway
ski03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ski00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7D50_04180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ski03019
]
D7D50_04180
Messenger RNA biogenesis [BR:
ski03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7D50_04180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AYF93839
UniProt:
A0ABM6Z8V2
LinkDB
All DBs
Position
complement(820746..822428)
Genome browser
AA seq
560 aa
AA seq
DB search
MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
IVENIDRVKGVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRGAKL
YEINQNTELTFKHIKATFFRTTHSIPEPLGIVLHTPQGKIVCTGDFKFDFTPVGEPADLH
RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFRLQ
QAADAAVKTGRKIVVFGRSMEKAIVNGIELGYIKVPPGTIIEPSEIKDYPANEILIMCTG
SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNRLINIISEAGVDVIHGK
INNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKIHAGLARDCGVEKDNIFIMSNG
DVLALTANSARIAGSFNAQDIYVDGNRIGEIGAAVLRDRKDLSEDGVVLAVATVDFKSKM
ILAGPDILSRGFIYMRESGDLIRESQRILFNAIRIALKNKDANIQTVHGAIVNALRPFLY
ESTEREPIIIPMILTPDEEN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcatataccttaaaacctgaagaagttggtgttttcgccattggaggtctcggggaa
attggtaaaaatacctatgggattgaataccaagacgaaatcatcattgtagatgcgggg
atcaagtttcctgaagatgatttgttagggattgattacgttattcctgactattcctat
atcgttgaaaatatcgaccgtgtcaaaggggtcttgattactcacggacacgaagaccat
atcggaggaattcccttcctcttgaagcaagccaatgtgcctatctatgctggacctttg
gccctagcccttattcgtggaaaattagaagagcatggcctccttcgtggtgctaaactc
tatgaaatcaaccaaaatacggagttgacctttaagcatattaaagcgaccttcttccgt
acgacccactctattccagaacctttggggatcgttctccacacgcctcaaggaaaaatt
gtctgcacgggagactttaaatttgactttactccagttggtgagccagccgatctgcac
cggatggccgcactaggagaggaaggcgttctctgtctgctttctgactcaaccaacgcg
gaagtcccaacctttaccaactctgaaaaagtcgttggccaatccattatgaagattatt
gaaggcattcatggacgcatcatctttgcttcctttgcatcaaacatcttccgtctccaa
caggctgcagatgccgctgttaaaactggccgtaagattgttgtctttggacgctcgatg
gaaaaggccattgtcaacgggattgagctgggctatatcaaggtaccacctggaacaatt
attgaaccaagtgagatcaaagactacccggcaaacgaaatcctcattatgtgtacaggg
agccaaggggagccaatggcggcactatctcgtatcgctaatggaacccaccgccaagtg
caattgcaaccgggtgataccgttatcttctcatctagtccgattcctggcaacacaact
agcgtcaaccgcctgatcaacatcatctctgaagcaggagtcgatgtcatccacggtaag
attaacaatatccatacctctggacacggtggtcaacaagaacaaaagctcatgttgcgc
ttgatcaagccaaaatacttcatgcctgttcacggtgagtaccgcatgcagaaaattcat
gctggacttgcgcgtgattgcggagtagaaaaggataacatcttcatcatgagcaacggt
gatgtccttgccttaacagccaactcggctcgtatcgcaggaagtttcaatgctcaagat
atctatgtcgacggaaatcgcatcggagaaatcggagctgctgtccttcgtgaccgcaaa
gatttatcagaagacggtgttgtcctagctgttgcgacagttgacttcaagtcaaaaatg
attttagctggaccagatattctcagtcgtggtttcatctatatgagagagtctggtgac
ctgatccgtgaaagtcaacgtatcctcttcaatgctatccgaatcgccttgaagaacaaa
gatgccaacattcaaaccgtacacggtgctattgtcaatgccctccgtcctttcctttac
gaaagtacggaacgtgaacccatcatcatcccgatgattttgacaccagatgaagaaaac
taa
DBGET
integrated database retrieval system
