Streptococcus koreensis: D7D50_06090
Help
Entry
D7D50_06090 CDS
T06405
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ski
Streptococcus koreensis
Pathway
ski03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ski00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7D50_06090 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ski03019
]
D7D50_06090 (rnr)
03016 Transfer RNA biogenesis [BR:
ski03016
]
D7D50_06090 (rnr)
Enzymes [BR:
ski01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D7D50_06090 (rnr)
Messenger RNA biogenesis [BR:
ski03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7D50_06090 (rnr)
Transfer RNA biogenesis [BR:
ski03016
]
Prokaryotic type
tRNA degradation factors
D7D50_06090 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
S1_RRP5
CSD
HTH_DeoR
Motif
Other DBs
NCBI-ProteinID:
AYF94186
UniProt:
A0ABM6Z9M0
LinkDB
All DBs
Position
1201341..1203701
Genome browser
AA seq
786 aa
AA seq
DB search
MKSKIIDYLKQEGKAQVDQLAQAIGSTDAKGFRELIKTISLMERRRQLTFEENGFLSLLD
AKPKGTITVKGIFHAHKSGFGFVSLEGEEEDLFIGRNDVNHAIDGDTVEVVITKVADRQK
GTAAEGKIIDVLEHSLQTVVGQIVLDEEKPKYAGYIVSKNQKISQRIYVKKPALQLEGTE
VLKVAIEQYPSRKHNYFVATVQDVVGHVTDPGIDVLEVLESMDIVSEFPEAVLKEAESIP
DKPSEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKRLEGGNYELGVHIADVSYYVTEG
SALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDERGRVLRYQ
ITQTVIKTTFRMTYSDVNEIIAGDQEKREEYQAIVPSIEAMVGLHQILEGMREKRGALNF
DTSEAKILVNPQGKPVDIVLRQRGIAERMIESFMLIANETVAEHFAKRKLPFIYRVHEEP
KAEKVQKFIDYASSFGIPIYGTASSMSQETLQDIMKKVEGEPYADVLSMMLLRSMQQARY
SEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVREYGKDSEVASHFEQVIPDIASQSSS
RERRAIDAEREVEAMKKAEYMEDYVGEEYDALVSSVVKFGLFVELPNTVEGLIHITTLPG
FYHFNERDLTLRGEKSGVTFRVGQEIRIRVERADKMTGEIDFSYIPSELDLIEKGHKASG
RKEGGPSSKRRPSKKEGERKQGGFRDNKRKHSPKDKKKKSKKPFYKEVAKKGVKHGKGRG
KGRRTK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtaaaattattgattatttaaaacaggagggaaaagctcaggttgatcaattg
gcacaagccattgggagtacagatgccaaaggttttcgtgaactgattaagaccatttcg
ctaatggagcgacgtcgtcaactaacctttgaagaaaatggctttttaagtctccttgat
gctaaaccaaaagggactattactgtgaaagggatttttcatgctcataagagtggcttt
ggttttgtcagcttagagggggaagaagaggatctctttattggacgaaatgatgtcaac
cacgccattgatggggatacagttgaggttgtgatcaccaaggtagccgatcggcaaaag
gggacagcggcagaggggaaaatcatagatgtcttggagcatagtctccaaacagttgtc
ggccagattgttttggatgaagaaaagcccaagtatgcaggctacatcgtttcaaagaat
caaaagattagccaacggatctacgtgaaaaagccagccctgcaattggaggggacggaa
gttctcaaggttgccattgagcagtatccgagtcgcaaacacaactactttgtggccact
gttcaagatgtggttgggcatgtcacagatcctggaatcgatgtcttggaagtcctagag
tccatggatatcgtctcagaatttccagaagcagtcctcaaagaagcagaaagcattcca
gacaagcctagtgagaaagatatggagggacgtttggaccttcgagatgaaatcatcttt
accattgatggtgccgatgccaaggacttggatgatgcggttcacattaaacgcttggaa
ggcggaaactatgaacttggagttcacattgcagatgtctcatattatgtgactgaaggt
tctgccctagacaaggaagccctcaatcgcgccacctcagtctatgtgacagaccgagtc
gttcctatgttaccagagcgactttccaatgggatttgttccctaaatcctcaagtggat
cgcttgacccaatcagccattatggagattgacgagcgtggtcgggtccttcgttaccag
attacccaaacagttattaaaacgaccttccggatgacctatagtgatgtcaatgagatc
attgcaggagaccaagagaagcgtgaggaataccaagctattgttccaagtattgaagct
atggttggccttcatcagatcttagaaggaatgcgggaaaagcggggagcccttaacttt
gataccagtgaagctaaaatcctggtcaatcctcaaggaaaaccggtcgacatcgtcttg
cgtcaacggggaattgcagaaaggatgattgaatcctttatgctaattgccaatgagaca
gtagctgagcattttgccaaacgaaaacttcccttcatttaccgggttcacgaagaacct
aaagcagagaaggtgcaaaagtttatcgattatgcctctagctttggcatacctatttat
gggacagctagttcgatgagtcaggaaaccttgcaggatatcatgaagaaggtagaaggg
gaaccttatgctgatgtcttgtccatgatgttgcttcgttccatgcagcaggcgcgctat
tccgagcacaaccatggtcactatgggctagctgcggagttctatactcactttaccagt
ccgattcgccggtatccagacttattagtccaccgtatggtgcgagagtatggaaaagat
tctgaagtggctagtcattttgaacaggttattccagatatcgctagccaatcctctagt
cgggaacgccgcgctattgatgcggagcgagaagtagaagccatgaagaaggcagagtat
atggaggactatgttggcgaagagtacgatgctctggtatccagtgtcgtcaagtttgga
ctctttgttgaacttccaaatactgtagaaggtttgatccacatcaccaccttacctggt
ttttatcattttaatgagcgtgatttgaccttgcgaggggaaaaatcaggcgtgaccttc
cgagttggtcaagagatccgaattagggttgaaagagcggataagatgactggagaaatc
gatttttcttatatcccaagtgagctggatctgattgaaaaaggccataaagcttctggg
cgtaaggaaggaggtccatcttctaaacgccgtccttccaagaaagaaggagagcgaaag
caaggaggctttagagataacaagcgcaagcattctccaaaagacaagaagaaaaagagt
aagaaacctttttacaaagaagtagcaaagaaaggagtcaagcatggcaaagggcgaggg
aaaggtcgtcgcacaaaataa
DBGET
integrated database retrieval system
