Staphylococcus kloosii: C7J89_08425
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Entry
C7J89_08425 CDS
T05401
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
skl
Staphylococcus kloosii
Pathway
skl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7J89_08425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skl03019
]
C7J89_08425
03400 DNA repair and recombination proteins [BR:
skl03400
]
C7J89_08425
Enzymes [BR:
skl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7J89_08425
Messenger RNA biogenesis [BR:
skl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7J89_08425
DNA repair and recombination proteins [BR:
skl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C7J89_08425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AVQ36156
LinkDB
All DBs
Position
1684019..1685398
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AA seq
459 aa
AA seq
DB search
MLHDALKKWFGFDSFKDGQEAIITSVLNHTNTLGILPTGSGKSLCYQLPTYINQKPTLIV
SPLISLMDDQVMQMKVNGETSVSCVHSGMDEQERQFNLSKIKSSRFIFLSPEFLLQPFNT
KLLNQLDLGLIVLDEAHCLSEWGYDFRPHYALIGKITRQFPKATILALTATAQPYLLNDI
NHMLNTKFTEIKTTMNRDNISLSHLNFDNDEGKLTWLLNFIQHSGPTIIYVSSKKICLTL
AKAIYNEGYLTGIYHGDLTYQERHTVQHQFINNEIPIIVATSAFGMGINKKDIRTIIHFH
LPTSPSSYMQEIGRAGRDGEISQAISLYQPDDSFLLDTLLFTDSITEDDITLFESGDLID
PVKVEMLTILNDYYSINELTTIFNKAYQRKQIAYKKMIGYKMLDSCRRQFLLNYFGENDF
AKPLNCCDNDSDLKNLTIYNRKKVKRKMNYYEKLQNLFN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgttacatgatgcactcaaaaagtggtttggctttgatagttttaaagatggtcaagaa
gccatcataacaagtgtcttaaaccatactaatactttaggcatcttgcctacaggtagt
ggtaagagcttgtgttatcaacttcccacctatataaatcaaaagccaactttaattgtg
tcaccattaatttcattaatggacgatcaagtcatgcaaatgaaagtaaatggcgaaaca
tcagtaagttgtgttcattcaggcatggatgagcaagaaagacaatttaatttatcaaaa
attaaatctagtcgctttatctttttaagtcctgaatttttattacaaccatttaacact
aagttattaaaccaactcgatttaggattaatcgtgttagatgaagcacactgtctgtca
gaatggggctatgatttcagaccgcattatgcgttaattggtaagataactcgccagttt
cccaaagctactatcttagctttaacagcaacggcacaaccatatttacttaatgatata
aaccatatgttaaatactaaatttacggaaattaaaacaacgatgaatagagacaatatt
tctctctcacatctaaactttgataacgatgaaggcaagttaacttggcttttaaatttc
attcaacattctggaccaaccatcatctatgtttcttctaaaaaaatttgtttaacttta
gctaaagcaatatacaatgaaggatacttaacagggatttatcatggggatttgacctat
caagaaagacacaccgtgcagcatcagtttataaataatgaaattcctattattgtcgct
acaagtgcatttggaatggggattaataagaaagatattagaactattattcatttccac
ttaccgacaagcccttcaagttatatgcaagagattggcagagcagggcgtgatggggaa
attagccaagcaatcagtttatatcaacctgatgacagttttctattagacacattactt
tttactgatagtataactgaagatgatataactttatttgaatcaggtgacttaattgat
cctgttaaagttgaaatgctaactatacttaatgactattattcgataaatgagctaact
acaatttttaataaagcatatcaaaggaaacaaatcgcctataaaaaaatgattggctat
aaaatgctagattcatgtagacgtcaatttttacttaattattttggcgaaaatgatttt
gcaaaaccgttgaattgttgtgataatgactcagatttaaaaaatttaacgatatataat
agaaaaaaagtaaaacgtaaaatgaattattatgaaaagttacagaatttatttaattaa
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