Staphylococcus kloosii: C7J89_12935
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Entry
C7J89_12935 CDS
T05401
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
skl
Staphylococcus kloosii
Pathway
skl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
skl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7J89_12935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skl03021
]
C7J89_12935 (rpoC)
03400 DNA repair and recombination proteins [BR:
skl03400
]
C7J89_12935 (rpoC)
Enzymes [BR:
skl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7J89_12935 (rpoC)
Transcription machinery [BR:
skl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7J89_12935 (rpoC)
DNA repair and recombination proteins [BR:
skl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7J89_12935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AVQ37031
LinkDB
All DBs
Position
complement(2588742..2592365)
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVLVDPGPTGLEKKTLLSEAEFREYYDKFPGQFNAKMGAEGIKELLE
EIDLDEELKQLRDELESATGQRLTRAIKRLEVVESFRHSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFIMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIVEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGTIYNDTNEVLKAYANGYVHLHTRIGVH
ARSFNNPTFTEEQNNKILTTSVGKVIFNEIIPDSFAYINEPTQANLEDKTPDKYFVSATE
LGEGGLAEYFEDKELIEPFNKKFLGNVIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVSDIVVLPDKKDILDEHDELVEKVTKQFNRGLITEDERYNRVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIREGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITPDIAKKITDVGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVIKGSNEVRSYLASGTSRLKVEIGQ
SVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKDRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDNLLGLKENVIIGKLIPAGTGMRRYRDVEYDKAAPEQEVEE
SIEFTES
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaataggacttgcttcacctgaaaaaatc
cgttcatggtcatttggggaagttaaaaagccagaaacaattaactatcgtacgttaaaa
ccagaaaaagatggtctattctgtgaaagaatattcggacctactaaagactgggaatgt
agttgtggtaaatacaaacgtgttcgttataaaggcatggtttgtgacagatgtggtgtt
gaagtaactaaatctaaagtacgtcgtgaaagaatgggtcatatcgaactagctgcacct
gtttctcacatttggtacttcaaaggtattccaagtcgtatgggactattactagatatg
tctcctagagctttagaagaagtaatttacttcgcatcttacgtacttgttgatccaggt
ccaactggattagagaagaaaactttattatctgaagctgaattcagagaatactatgat
aaattccctgggcaatttaatgccaaaatgggtgctgaaggtattaaagaattattagaa
gaaatcgacttagacgaagaacttaaacaattgcgtgatgaattagaatcagcaactggt
caaagactgactcgtgcaattaaacgattagaagtagttgagtcattcagacattctggt
aacaatccagcttggatgattttagatgtacttccaattatcccacctgaaatcagacca
atggttcaattagatggtggacgttttgctacaagtgatttaaacgatttataccgtcgt
gttattaaccgtaataatcgtttgaaacgtttattagatttaggtgcacctggcatcatc
gttcaaaacgaaaaacgtatgttgcaagaagctgtagacgcattaatcgacaatggtcgt
cgtggccgtccagtaactggtccaggtaaccgtccattaaaatcactttctcatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcaggt
cgttcggttattgcagtaggaccaagcttgaaaatgtaccaatgtggtttaccaaaagaa
atggctttagaattattcaaaccatttatcatgaaagaacttgtacaacgtgagattgct
actaacattaaaaatgcgaaaagcaaaatcgaacgtatggacgatgaagtatgggatgta
ttagaagacgttatcgttgaacatccagtattacttaaccgtgcgccaacgcttcacaga
ctaggtattcaagcatttgaacctacactagttgaaggtcgtgcaatccgtttacaccca
cttgttactacagcatataacgctgactttgacggtgaccaaatggctgttcacgtacct
ttatcaaaagaagcacaagctgaagcacgtatgttaatgttagcagctcaaaatatctta
aaccctaaagatggtaaaccagttgttacaccatcacaggatatggtattaggtaactac
tacttaacattagaacgtaaagatgctgtaaatacaggtactatctacaatgatacaaac
gaagtattaaaagcatacgcaaatggttatgttcacttacacactcgtattggtgtacat
gcacgttcatttaacaacccaacatttacagaagaacaaaataacaaaattttaactact
tctgttggtaaagtaatattcaatgaaatcattcctgattcatttgcatatattaacgaa
cctactcaagcaaacttagaagataaaacacctgataaatatttcgtatctgcaactgaa
cttggtgaaggcggattagcggaatactttgaagataaagaacttatcgaaccatttaac
aaaaaattcttaggtaatgtcattgcagaagtgttcaatcgcttcagtatcactgacaca
tctatgatgcttgatagaatgaaagatttaggtttcaaattctcttctaaagctggtatc
actgttggtgtatctgacatcgttgtattaccagacaaaaaagatatcttagatgaacac
gatgaattagttgaaaaagtaactaaacaatttaaccgtggtttaatcactgaagatgaa
cgttataacagagtcgttgaaatttggactgacgcaaaagaccaaattcaaggcgagtta
atgcaatcattagaaaaaactaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcatctaactttacacagttagctggtatgcgtggacttatggctgcgccttctggt
aagatcattgaattaccaatcacatcatcattccgtgaaggtttaacagtattagagtac
ttcatctctactcacggtgcgcgtaaaggtcttgccgatacagcactgaaaactgccgat
tcaggttatcttactcgtcgtcttgttgatgttgcacaagatgttatcgtacgtgaagaa
gattgcggaacggaccgtggtttacttgtttcagatatccgagaaggtactgaaatgatc
gaaccgtttatcgaacgtattgaaggtcgttattctaaagaaacaattcgtcatccagaa
acagacgaaattattattcgtccagatgaattaatcacaccagacattgctaaaaaaatt
actgatgttggtatcgaacaaatgtatatccgttcagcatttacatgtaatactagacat
ggtgtatgtgaaaaatgttacggtaaaaaccttgctacaggtgaaaaagttgaagttggt
gaagcagttggtacaattgctgcccaatcaatcggtgaacctggtacgcagcttacaatg
cgtacattccatactggtggtgtagcaggaagcgatatcacgcaaggtcttcctcgtatc
caagagatttttgaagcgcgtaatcctaaagggcaagcggttattacagaaatcgaaggt
gttgtagaagatattaaattagctaaagatcgtcaacaagaaattgtgattaaaggtagt
aacgaagttagatcatatcttgcttcaggtacttcaagacttaaagtagaaattggccaa
agcgttgaacgtggtgaagtattaactgaaggttcaattgaacctaagaactacttatca
gttgctggcttaaatgctactgaaagttacctattaaaagaagtacaaaaagtttaccgt
atgcaaggtgttgaaatcgatgataaacacgttgaagttatggtaagacaaatgttacgt
aaagtacgtatcattgaagcaggtgacactaaactattacctggttcattagtagatatt
cacaactttactgatgctaaccgtgaagcgtttaaagatcgtaaacgtccagcgacagct
aaaccagtattattaggtattacgaaagcttctcttgaaactgaaagcttcttatcagct
gcttcattccaagaaacaactcgtgtacttactgatgctgcaattaaaggtaaacgtgat
aacttactaggccttaaagaaaatgtaatcatcggtaaacttatcccagctggtacaggt
atgagacgttatagagacgttgaatacgataaagctgcaccagaacaagaggtagaagaa
tcgatagaatttactgaatcataa
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