Sinorhizobium kummerowiae: PZL22_001408
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Entry
PZL22_001408 CDS
T09063
Name
(GenBank) thrombospondin type 3 repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
skm
Sinorhizobium kummerowiae
Pathway
skm00040
Pentose and glucuronate interconversions
skm01100
Metabolic pathways
skm01120
Microbial metabolism in diverse environments
skm02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
skm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PZL22_001408
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PZL22_001408
Enzymes [BR:
skm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PZL22_001408
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GFIT
Motif
Pfam:
TSP3_bac
Motif
Other DBs
NCBI-ProteinID:
WHS91424
UniProt:
A0ABY8T0L2
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All DBs
Position
pSkuCCBAU71714b:1532316..1533764
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AA seq
482 aa
AA seq
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MTVIYQAHDVRAFGFTIARCLILAGLVCGSWVGFSRQALAQAALTEPLSPKLPDGRQRAF
PTAEGFGAGSLGGRGGKVVYVVNTNESGQGSLRACIEASGPRICIFRTGGTIVLRERSLV
VRHPFLTIAGETAPGGGIAIRNGETQIRPSIEIVTNDVIIRHIRLRPGPHAVKACCSGGL
GMYSSSAKDIMLDHISASWGSDETIDSEDASNFTWQWGIASEPLLRGGPGKDKRARNMLF
TKGGNVSVHHSLFAFGQFRNPLIKMKIPGAVADVVNNVFYSPKWQYVLSFGDEWARIQAN
VVGNYKIAGEKLRDDHMVHLFEESGRGHAIYLKDNYDEPYRTGASEDDTLVLAEKQRRFV
SASAFDAPAVRASAPEIAYEDVLAGAGATKPRRDAVDRRITEAVRNRSGRLLVNGPQDVG
GWPELDAGVPYPDSDMDGISDDWEVESGTDPADASDGRQDLDGDGWTNLEAFLHFMAGDT
AD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgacggtaatctaccaagcgcatgacgtaagggcatttggtttcacgatagcgcgttgc
ctgatattggcagggttggtctgcggatcatgggtcggcttctcacggcaagctctagcc
caggcggcactgaccgagccactttcacccaagcttccagacggcagacaacgtgccttt
cctacggccgaaggcttcggggccggctctcttggagggcgggggggcaaggtggtctat
gtcgtcaacacgaacgagtcagggcagggctccttgcgtgcgtgcatcgaggcatccggc
ccgcgcatttgtattttccgcacgggtggcaccattgttcttcgcgaaagatcgctggtc
gttcgacatccattcctgacgattgccggagagacggcgccgggcggcgggatcgccatc
cggaacggcgagacgcaaattcgtccttcaatcgaaatcgtgaccaatgacgtgatcatc
aggcacattcgtcttcgccccggtccgcatgccgtgaaggcttgctgttccggaggcctc
ggaatgtactccagctcggcgaaggacatcatgctcgatcatatctccgccagctgggga
tcagacgagacgatcgattcggaagacgcgagcaacttcacctggcagtggggtattgcg
agcgaaccgctgctgcggggcggccccgggaaagacaagcgtgcgcgcaacatgttgttc
acgaagggcggcaacgtctccgtgcatcactctctcttcgctttcggccagttcagaaat
ccgctgataaagatgaaaattcccggcgccgtcgccgatgtcgtgaacaacgtgttttac
tcgcccaagtggcaatatgtcctaagcttcggcgatgaatgggcgcggatccaggctaat
gtggtcggcaactacaagatcgcgggggaaaagctgcgagacgatcatatggttcatctc
ttcgaagaaagcggacgcgggcacgcaatctatttgaaggacaattacgacgaaccatat
cgcactggcgccagcgaggatgacacccttgttttggccgagaaacaaagaaggttcgtt
tcagcgtcggcattcgatgcaccggcggtccgcgcttctgcgcccgaaattgcttacgag
gacgtcctcgcaggtgcgggtgcgacgaagcctcggcgcgacgccgtcgatcgccgcatc
accgaggcggtcaggaatcgcagtggacgactgctcgtgaacggtccgcaggacgtcggc
ggttggccggaactcgatgccggggtgccgtacccggacagcgacatggacggtatctcg
gatgactgggaggtcgaaagcggcaccgatccggcagatgccagcgatgggcgacaggac
ttggatggcgacggatggacaaatctcgaagcgtttctccatttcatggcgggcgatacc
gcggattag
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