Sinorhizobium kummerowiae: PZL22_001447
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Entry
PZL22_001447 CDS
T09063
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
skm
Sinorhizobium kummerowiae
Pathway
skm03030
DNA replication
skm03430
Mismatch repair
skm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PZL22_001447 (dnaE)
03430 Mismatch repair
PZL22_001447 (dnaE)
03440 Homologous recombination
PZL22_001447 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skm03032
]
PZL22_001447 (dnaE)
03400 DNA repair and recombination proteins [BR:
skm03400
]
PZL22_001447 (dnaE)
Enzymes [BR:
skm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PZL22_001447 (dnaE)
DNA replication proteins [BR:
skm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PZL22_001447 (dnaE)
DNA repair and recombination proteins [BR:
skm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PZL22_001447 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WHS93778
LinkDB
All DBs
Position
34202..37711
Genome browser
AA seq
1169 aa
AA seq
DB search
MTGNQGIGQGIGHGTGAAADPQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIAD
TNNLFAALEFSQKAADDGLQPIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATED
GYARLVELVSRAYLEGEGHQQTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALA
EARLQALIELFGDRLYVELQRHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDA
HDALMAVAHNAMVSDDSRFRLTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKT
RGPILPRFTGASDDPEEAERAEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFEL
GVIQRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFE
RFLNPERVSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVL
EMPYGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRH
ASTHAAGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKT
AVDFVGKRGIHIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDII
ALVALYRPGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSG
YSLGEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKS
HAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTS
HRHFETGDNRIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFES
LIAAGAFDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALSPYT
PWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVT
SKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVMTVDAEERPEGI
GLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASHLNAKGDGLVSFIVIKDNGQREIE
VELNEKYRISPEIAAALRSAPGVVDVELV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcaaccagggtatcgggcagggtatcgggcacggcacaggggctgcggccgat
ccgcagttcgttcacctgcgggtgcattccgcctattcgttgctggaaggcgccttgccg
ctgaagaagatcatcggcaaggcggtcgccgacgatcagccggcgatcggcatcgccgac
accaataatctcttcgcggcactcgaattctcgcagaaggcggccgacgacggattgcag
ccgatcatcggctgccagctctcgatcgatatggaagacgaggcggaaggcgagcggcgc
ggacacgcccatcagttcgtcaaacttcccgcgatcgtgctgatcgcggcgaccgaggac
ggttacgcccgcctcgtcgagctcgtgagccgcgcctatctcgaaggcgagggtcaccag
caaacgcgaataagccgctcctggcttgcggctggcggcacgaccggcctgatcgcgctc
accggtgcgggagccggcccggtcgacatggcgctgaagtcgggttcgccggctctggcc
gaggcacgcctgcaagccttgatcgagcttttcggcgatcgcctctatgtcgaactgcag
cggcacgggaattacgaccggcgtcacgagaaccgcatgatcgatctcgcctatcggctc
gacattccgctcgtcgccaccaacgaggcgtttttcccgtcgccgtccgactatgatgcc
cacgatgcgctgatggccgtcgctcacaatgcgatggtgtccgacgacagccgtttccgt
ctgaccccggatcattacctgaagagccgcaaggagatggcggcgctctttgcggatctg
cccgaggcattggagaatacgatcgaggtggcgcggcggtgctccttcatgttgaagacc
cgcggaccgatcctgccgcgctttaccggcgcttcggatgatccggaggaggctgaacgc
gcggaggtagcggaactgcgccggcaggcggaggaggggctggaggaacgccttgccaag
ctcggcatggcgcccggctacaaggaagaggactatcgggagcggctggccttcgaactc
ggcgttatccagcggatgaagtttccgggctacttcctcatcgttgcggacttcatcaaa
tgggccaagcagcatgacattccggtcgggccgggccgcggctcgggtgccggctcgctg
gtcgcctatgccctgacgatcaccgatgtcgacccgatgcgcttctcgctgcttttcgag
cgcttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgatttctgccaggac
cggcgcgaggaggtcatccgctacgtgcagcagaaatacggccgcgagcaggtggcgcag
atcatcaccttcggatcgctgcaggcgcgtgcagcactgcgcgacgtcggccgcgtgctg
gaaatgccctatggccaggtcgacaagatctgcaagctggtgccgaacaatcccgccaac
ccgacaccgctttccaaggcgatcgaggaggaaccgcgcctgcaggaagaggcggagaag
gagccggtcgttgcccgtctcctcgacattgcccagaagatcgaggggctttaccgccac
gcctcgacgcacgcggccggcatcgtcatcggcgacaggccgctctcgcagctcgtgccg
atgtaccgcgatccgcgctccgacatgccggtcacccagttcaacatgaaatgggtcgag
caggcgggtctcgtgaagttcgacttccttggcctgaagacgctgaccgttctgaagacc
gccgtcgacttcgtcggcaagcgcggcatccatatcgacctcgcaagcattccgcttgac
gatccgaagacctacgagaccctttcgcgcggcgagacggtcggcgtgttccaggtggaa
agcgccggcatgcgcaaggcgctgatcggcatgcgcccggactgcatcgaggacatcatc
gcgctcgtggcgctctatcgcccgggtccgatggagaacatcccggtctacaacgcccgc
aagcacggcgaggaggagatcgaatcgatccatccgaagatcgattacctgctcaaggag
acgcagggcgtcatcgtctaccaggagcaggtgatgcagatcgctcaggtgctctcgggc
tattcgctcggcgaggccgacctcctgcgccgcgccatgggcaagaagatcaaggcggag
atggacaagcaacgcgcccgcttcgtcgatggcgccgtcaagaatggcgtctcgaagccg
caggccgacctgatcttcgaccttctcgccaagttcgccaattacggcttcaacaagtcg
catgccgccgcctacgccatcgtctcctaccagaccgcctacatgaaggcgcattatccg
gtcgagttcctcgcagcgtcgatgacgctcgacatgtcgaacacggacaagatcaacgat
ttccgtcaggacgcgatgcgcctcggcattcaggtggtcgcgccgtcagtgcagacctcc
caccgccacttcgaaaccggcgacaaccgcatctattactcgctcgccgccctaaagggc
gtcggcgagtcggccgtcgaccacatcgtcgccgtgcgtggcgatcggcccttcgcaagt
ctcgaagacttctgcctgaggatcgatccgaagctcttgaaccgacgtgttttcgaaagt
ctgatcgccgccggtgctttcgactgcttcggctacgaccgggcggagctcatcggcggg
ctcgatcgcatcctcggtttcgcgcagcgcgcccaggaaaacaaggtgagcggccagagc
gacatgttcggcgcgggggccgcgacggggcccgagaagatagcgctttcgccctatacg
ccgtggctcgcctcggagaagctgcatcgcgagttccaggtcttgggcttctatctctcc
gcccatccgctcgacacctacaataatctgctcgcgaagatgcgcgtgcagacatttgcg
gatttctcggcagccgtgaaaaagggagcggcggcgggccgcctcgccggtacggtgacg
tcgaagcaggaacgcaagacgcgcaccggcaacaagatggggatcgtcgccttctcggac
gcttcgggccagttcgaggccgtgctcttctccgaaatgctgaaccagtatcgcgatctt
ctggagcccggcaaatcgctggtgatgacggtcgacgccgaagagcggccggaagggatc
ggccttcgtatccgaaccctgcgttcgctcgaggaggaatcgctgcagatgcagaaggcc
ttgcgcgtctatgtgcgcgactgcggaccgctgcgctccatcgcttcgcatctgaacgcc
aagggggacggcctggtttcctttatcgtcatcaaggacaacggacagcgggagatcgaa
gtcgagctcaacgagaaataccggatctcacccgagatcgccgccgcccttcgctccgcg
cccggggtggtggacgtcgagctggtttaa
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