Sinorhizobium kummerowiae: PZL22_002478
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Entry
PZL22_002478 CDS
T09063
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
skm
Sinorhizobium kummerowiae
Pathway
skm03420
Nucleotide excision repair
skm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
skm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PZL22_002478
03430 Mismatch repair
PZL22_002478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skm03400
]
PZL22_002478
Enzymes [BR:
skm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PZL22_002478
DNA repair and recombination proteins [BR:
skm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PZL22_002478
MMR (mismatch excision repair)
Other MMR factors
PZL22_002478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
WHS94737
LinkDB
All DBs
Position
1077654..1080227
Genome browser
AA seq
857 aa
AA seq
DB search
MTKGFDDIPFFDEEPAPRKPAAAGGGIAARAMAARDKAQRPDYVSGLNPEQREAVEALEG
PVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVGHAVE
GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF
AGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMF
RANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQASRNRPSSGLPATFSPSDG
EKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFPG
AKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPDDEKVHVHAAWDSEEEAR
AIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDA
MAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARARDIPMLAAASDIVETDELK
PKARKGLFDVVADFRRWQTLLETTPHTELAEQILDESGYTAMWQADKSAEAPGRLENLKE
LIRSMEAFESMRGFLEHVALVMDAEQNENMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFP
HQRALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTLPSRFLDELPIA
HVEVAEQEVSYGGYGRGGYGQSRFDKADPFENNYQTPGWKRAQQHRSEATRDNWGTRSGH
AIERIGYGESGPRTRTIEGELVAKSTSAEPSRFNVGDRVFHIKFGNGNIAAIEGNKLTID
FDRAGQKRVLDGFVERV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaggttttgacgatattccctttttcgacgaggagcccgcgccgcggaaaccc
gcggccgccggcggcggcatcgccgcgcgcgccatggccgcccgcgacaaggcccagcga
ccggactatgtctccgggctcaatccggagcaacgggaggcagtcgaggcgctggaaggt
ccggtactcgtgctcgccggcgccggcaccggcaagacgcgcgttctgacgacgcggatc
gcccatatcctttcgaccggccgcgcctatccctcgcagatcctcgccgtcaccttcacc
aacaaggcggcgcgggagatgaaggagcgcatcggcgtgctcgtcggccacgccgtcgaa
ggcatgccctggctcggcaccttccactcgatcggggtcaagctcctccgccgccatgcc
gagctggtgggcctgcggtccgacttcaccatcctcgacaccgacgacgtcgttcgcctc
atcaagcagctcatccaggcggagggcctcgacgacaagcgctggccggccaagcagttc
gccggcatgatcgacacctggaagaacaagggcctggacccgtcgcaaatcccggaaggc
gatgcccgcgcctttgccaacggcaagggccgcgagctctatgccgcctaccagaaccgg
ctgctgaccctgaatgcctgcgatttcggcgacctgctgctgcatccgatccgcatgttc
cgcgccaatccggacgtgctgaaggagtatcacgccaagttccgttacatcctcgtcgac
gagtaccaggacaccaacacggcgcaatatatgtggctgaggctgctggcccagcagacg
caagcgtcgcgaaatcgcccctcatccggcctgccggccaccttctccccgtccgacggg
gagaagggacaagcggcgcgttcgcaatcccccctctccccgtcagaacggggagagggc
cggggtgaggggcaacccaccgtcaacatctgctgcgtcggcgacgacgaccagtcgatc
tacggctggcgcggcgccgaggtggacaacattctccgcttcgagaaggatttccccggc
gccaaggtcatcaagctggagcgcaactaccgctcgaccgagcatatcctcggcgcggcg
gcgcatctgattgcccataacgagggccggctcggcaagacgctctttaccgagcgcacg
aatcccgacgacgagaaggtgcatgttcatgccgcctgggactccgaggaggaggctcgc
gcgatcggcgaagagatcgagcagctccagcgcaagaagcacaatctgaacgacatatcg
atcctcgtgcgcgcttctttccagatgcgcgaattcgaagaccgcttcgtcacgctcggc
ctcaactatcgcgtcatcggcggccctcgcttctatgagcggctcgaaatccgcgatgcc
atggcctatttccgcctcgtctgccagcccgccgacgacctcgccttcgagcggatcgtc
aacacgccgaagcgcggcctcggcgagacgaccgtccgcaccctgcacgactatgcccgg
gcccgcgacatcccgatgctggccgcggcaagcgacatcgtcgagacggacgaattgaag
ccgaaggctcgcaagggcctcttcgacgtcgtcgccgatttccgccgctggcagacattg
ctcgaaacgacgccgcacaccgaacttgcagagcagatcctcgacgagagcggctatacc
gccatgtggcaggccgacaaatcggcggaagcgcccgggcgcctcgaaaacctgaaggag
ctcattcgttcgatggaagccttcgagtccatgcgcggctttctcgagcacgtcgcgctg
gtgatggacgccgagcagaacgagaatatggacgccgtctccatcatgacgctgcattcg
gccaaggggctggaattcgacaccgtcttcctgccggggtgggaggaagggctctttccg
catcagcgcgccctggatgaaggcggccgcgcaggtctggaggaggagcgccgcctcgcc
tatgtcggcatcacccgggccaagcgccgctgtcatatctggttcgtttcgaaccgccgc
atccacggcctctggcaatcgacgcttccctcgcgcttcctcgacgagttgccgatcgct
catgtggaagtggccgaacaggaggtctcctatggcggttacggtcgcggcggttacggc
cagtcgcgcttcgacaaggccgatcccttcgagaacaattaccagacgcccggctggaaa
cgcgcccagcagcaccggtcggaggccacccgagacaattggggcacccgctccggccac
gccatcgaacgcatcggttacggcgaatcgggcccccgcacccgcaccatcgaaggcgag
ctcgtcgccaagtcgacgagcgccgagccctcccgcttcaatgtcggcgaccgggtcttc
cacatcaagttcggcaacggcaacatcgcggcgatcgagggcaacaagctgacgatcgat
ttcgaccgcgccgggcagaagcgcgtgctggatgggttcgtagaacgggtgtga
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